1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcttcaaatcccatctcgaagtgtggtttttctggaaaaaataatgctggggaacaatgtgggccagcaattttttttgtgacagcgtagtcatttgcagGCTAGGCCATTGCTCACGCAAGCGCTCGAGACCGGCAATGCTGGGGAGCTGGTGGATGCCCGGCTTAATAGGAACTACAATGAAGTCGAAATGTTCCGTA
species | Zea mays |
transcript | GRMZM2G355636_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGCCTGTCGACGCGTCGAAGCCATTGGGCGATGAGAGCCTTGTTGAGTGG GCTAGGCCATTGCTCACGCAAGCGCTCGAGACCGGCAATGCTGGGGAGCTGEST: gi|211250045|gb|FL413628.1|FL413628
genomic: AGCCTGTCGACGCGTCGAAGCCATTGGGCGATGAGAGCCTTGTTGAGTGGgtaagctata ... tcatttgcagGCTAGGCCATTGCTCACGCAAGCGCTCGAGACCGGCAATGCTGGGGAGCTG
EST: AGCCTGTCGACGCGTCGAAGCCATTGGGCGATGAGAGCCTTGTTGAGTGG GCTAGGCCATTGCTCACGCAAGCGCTCGAGACCGGCAATGCTGGGGAGCTGEST: gi|14245637|gb|BG874219.1|BG874219
genomic: AGCCTGTCGACGCGTCGAAGCCATTGGGCGATGAGAGCCTTGTTGAGTGGgtaagctata ... tcatttgcagGCTAGGCCATTGCTCACGCAAGCGCTCGAGACCGGCAATGCTGGGGAGCTG
EST: AGCCTGTCGACGCGTCGAAGCCATTGGGCGATGAGAGCCTTGTTGAGTGG GCTAGGCCATTGCTCACGCAAGCGCTCGAGACCGGCAATGCTGGGGAGCTGEST: gi|32824875|gb|CD964597.1|CD964597
genomic: AGCCTGTCGACGCGTCGAAGCCATTGGGCGATGAGAGCCTTGTTGAGTGGgtaagctata ... tcatttgcagGCTAGGCCATTGCTCACGCAAGCGCTCGAGACCGGCAATGCTGGGGAGCTG
EST: AGCCTGTCGACGCGTCGAAGCCATTGGGCGATGAGAGCCTTGTTGAGTGG GCTAGGCCATTGCTCACGCAAGCGCTCGAGACCGGCAATGCTGGGGAGCTGEST: gi|78545086|gb|DV622584.1|DV622584
genomic: AGCCTGTCGACGCGTCGAAGCCATTGGGCGATGAGAGCCTTGTTGAGTGGgtaagctata ... tcatttgcagGCTAGGCCATTGCTCACGCAAGCGCTCGAGACCGGCAATGCTGGGGAGCTG
EST: AGCCTGTCGACGCGTCGAAGCCATTGGGCGATGAGAGCCTTGTTGAGTGG GCTAGGCCATTGCTCACGCAAGCGCTCGAGACCGGCAATGCTGGGGAGCTGEST: gi|78091057|gb|DV519431.1|DV519431
genomic: AGCCTGTCGACGCGTCGAAGCCATTGGGCGATGAGAGCCTTGTTGAGTGGgtaagctata ... tcatttgcagGCTAGGCCATTGCTCACGCAAGCGCTCGAGACCGGCAATGCTGGGGAGCTG
EST: AGCCTGTCGACGCGTCGAAGCCATTGGGCGATGAGAGCCTTGTTGAGTGG GCTAGGCCATTGCTCACGCAAGCGCTCGAGACCGGCAATGCTGGGGAGCTG
genomic: AGCCTGTCGACGCGTCGAAGCCATTGGGCGATGAGAGCCTTGTTGAGTGGgtaagctata ... tcatttgcagGCTAGGCCATTGCTCACGCAAGCGCTCGAGACCGGCAATGCTGGGGAGCTG
gctggggaacaatgtgggccagcaattttttttgtgacagcgtagtcatttgcagGCTAGGCCATTGCTCACGCAAGCGCTCGAGACCGGCAATGCTGGGGAGCTGGTGGATGCCCGGCTTAATAGGAACTACAATGAAGTCGAAATGTTCCGTA
aattttttttgtga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttcaaatcccatctcgaagtgtggtttttctggaaaaaataatgctggggaacaatgtgggccagcaattttttttgtgacagcgtagtcatttgcagGCTAGGCCATTGCTCACGCAAGCGCTCGAGACCGGCAATGCTGGGGAGCTGGTGGATGCCCGGCTTAATAGGAACTACAATGAAGTCGAAATGTTCCGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - -ttttctg
- - - - - - - - - - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - - aatgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - caatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccagca