1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgctacacaaggcataaggagattcatcttttggcattttcttttactatgtgttaagagagcttctgaattataacatttgtgttttaagCTTCCGGATCTGGTCGGTGTGAAATTAACAACGGAGGGTGCTGGAAAGATACCAAGAATGGTCGGACATACTCTGCCTGTACT
species | Zea mays |
transcript | GRMZM2G347541_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGCGTCAAATTTGTTGGCGATGGCTATACTCACTGTGAAG CTTCCGGGTCTGGTCGGTGTGAAATTAACAACGGAGGGTGCTGGAAAGATAEST: gi|71299569|gb|DR785796.1|DR785796
genomic: GGCGTCAAATTTGTTGGCGATGGCTATACTCACTGTGAAGgtatgctaca ... gtgttttaagCTTCCGGATCTGGTCGGTGTGAAATTAACAACGGAGGGTGCTGGAAAGATA
EST: AGTTGTGAAAGGCGTCAAATTTGTTGGCGATGGCTATACTCACTGTGAAG CTTCCGGATCTGGTCGGTGTGAAATTAACAACGGAGGGTGCTGGAAAGATAEST: gi|67021468|gb|CO450217.1|CO450217
genomic: AGTTGTGAAAGGCGTCAAATTTGTTGGCGATGGCTATACTCACTGTGAAGgtatgctaca ... gtgttttaagCTTCCGGATCTGGTCGGTGTGAAATTAACAACGGAGGGTGCTGGAAAGATA
EST: AGTTGTGAAAGGCGTCAAATTTGTTGGCGATGGCTATACTCACTGTGAAG CTTCCGGGTCTGGTCGGTGTGAAATTAACAACGGAGGGTGCTGGAAAGATAEST: gi|211224453|gb|FL435606.1|FL435606
genomic: AGTTGTGAAAGGCGTCAAATTTGTTGGCGATGGCTATACTCACTGTGAAGgtatgctaca ... gtgttttaagCTTCCGGATCTGGTCGGTGTGAAATTAACAACGGAGGGTGCTGGAAAGATA
EST: TTGTGAAAGGGCGTCAAATTTGTTGGCGATGGCTATACTCACTGTGAAAG CTTCCGGATCTGGTCGGTGTGAAAATTAACAACGGAGGGGTGGCTGG-AAEST: gi|67028179|gb|CO456928.1|CO456928
genomic: TTGTGAAA-GGCGTCAAATTTGTTGGCGATGGCTATACTCACTGTG-AAGgtatgctaca ... gtgttttaagCTTCCGGATCTGGTCGGTGTG-AAATTAACAACGGA-GGGT-GCTGGAAA
EST: AGTTGTGAAAGGCGTCAAATTTGTTGGCGATGGCTATACTCACTGTGAAG CTTCCGGGTCTGGTCGGTGTGAAATTAACAACGGAGGGTGCTGGAAAGATAEST: gi|76292778|gb|DV032346.1|DV032346
genomic: AGTTGTGAAAGGCGTCAAATTTGTTGGCGATGGCTATACTCACTGTGAAGgtatgctaca ... gtgttttaagCTTCCGGATCTGGTCGGTGTGAAATTAACAACGGAGGGTGCTGGAAAGATA
EST: AGTTGTGAAAGGCGTCAAATTTGTTGGCGATGGCTATACTCACTGTGAAG CTTCCGGATCTGGTCGGTGTGAAATTAACAACGGAGGGTGCTGGAAAGATAEST: gi|211301945|gb|FL333154.1|FL333154
genomic: AGTTGTGAAAGGCGTCAAATTTGTTGGCGATGGCTATACTCACTGTGAAGgtatgctaca ... gtgttttaagCTTCCGGATCTGGTCGGTGTGAAATTAACAACGGAGGGTGCTGGAAAGATA
EST: AGTTGTGAAAGGCGTCAAATTTGTTGGCGATGGCTATACTCACTGTGAAG CTTCCGGATCTGGTCGGTGTGAAATTAACAACGGAGGGTGCTGGAAAGATA
genomic: AGTTGTGAAAGGCGTCAAATTTGTTGGCGATGGCTATACTCACTGTGAAGgtatgctaca ... gtgttttaagCTTCCGGATCTGGTCGGTGTGAAATTAACAACGGAGGGTGCTGGAAAGATA
ttttcttttactatgtgttaagagagcttctgaattataacatttgtgttttaagCTTCCGGATCTGGTCGGTGTGAAATTAACAACGGAGGGTGCTGGAAAGATACCAAGAATGGTCGGACATACTCTGCCTGTACT
ttataac putative branch site (score: 97)
aattataacatttgtg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctacacaaggcataaggagattcatcttttggcattttcttttactatgtgttaagagagcttctgaattataacatttgtgttttaagCTTCCGGATCTGGTCGGTGTGAAATTAACAACGGAGGGTGCTGGAAAGATACCAAGAATGGTCGGACATACTCTGCCTGTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA