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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcttgcagtttgaatcgttgttaactcttcctgtgtttgtagTCCTGTTTGGTTTTGGCCTCCAGTTACTAA

Basic information

species Zea mays
transcript GRMZM2G347447_T01
intron # 7
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatgcttgcagtttgaatcgttgttaactcttcctgtgtttgtagTCCTGTTTGGTTTTGGCCTCCAGTTACTAA
                               tgttaac  putative branch site (score: 2)
                                     ctcttcctgtgttt  CT-rich tract
                     tttgaat  TA-rich tract