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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatctggaatcttgttccctgggcacccataataccttccttaactttgcaagctccattttttcagtaatgtcttcttttttttgaaagggaagcaatgtctttttaggtgcccatgttagttgatacacttataaaactttagttgattgcttaacagatgcaatcctgttccattttcagTTGGTTTTCATAATGGTGGTCTTTGCTTAAAAGACCGAGGTCTTGTTGAGGGGCTTTTCCTCAAGGGTGATCTTCAAGTTCTATGCACAACAAATACTTT

Basic information

species Zea mays
transcript GRMZM2G346278_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G346278_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g40450.1 (Oryza sativa), 3'ss of exon 10
gttatctggaatcttgttccctgggcacccataataccttccttaactttgcaagctccattttttcagtaatgtcttcttttttttgaaagggaagcaatgtctttttaggtgcccatgttagttgatacacttataaaactttagttgattgcttaacagatgca-atcctgttcca--ttttcagTTGGTTTTCATAATGGTGGTCTTTGCTTAAAAGACCGAGGTCTTGTTGAGGGGCTTTTCCTCAAGGGTGATCTTCAAGTTCTATGCACAACAAATACTTT
                                                              | || | |  |||  ||        || |      |||  |    |  | | ||||||||  |||||    |    ||  ||    |||||| |     |||||| ||| | || ||  ||||||||||||| ||| || |||||||||||| |||| ||  |  || | |||||||| |||||||| ||||||||| ||||| |||| ||||| || ||||||||
----------------------------------------------------------gtcatgttgaatcttgttctcgacccac-gataccttcacaacctacaat-ggtttcccatgtt--ttgatgtgttgcctaacattacactgattggt-----gatgcatatcttatttcaacttttcagTTGGTTATCACAACGGTGGTCTTTGCCTAAAGGATAGGAGTGTCGTTGAGGGACTTTTCCTGAAGGGTGATATTCAAATTCTTTGCACGACGAATACTTT

upper sequence: GRMZM2G346278_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA16G07850.1 (Glycine max), 3'ss of exon 9
gttatctggaatcttgttccctgggcacccataataccttccttaactttgcaagctccattttttcagtaatgtcttcttttttttgaaagggaagcaatgtctttttaggtgcccatgttagttgatacacttataaaactttagttgattgcttaacagatgcaatcctgttccattttcagTTGGTTTTCATAATGGTGGTCTTTGCTTAAAAGACCGAGGTCTTGTTGAGGGGCTTTTCCTCAAGGGTGATCTTCAAGTTCTATGCACAACAAATACTTT
               ||      || | | ||| ||   | ||    ||||   |||  ||      | ||||      | ||  | ||||| ||     ||   |   | |  ||    ||||       | ||  |||   || || |||    | ||   |  ||    | |    |   |||||||| ||| |||||||| |||||| | ||||| ||| || |||| || || ||||| |||||||||||  ||||||| || ||||| ||||||||   
---------------gtatgaaaggaatctata-tattgttctgggatttg---gctaaat------aataat------tcttactggaaagtgat----tgcaatcccatgcacctgaattag-------aatttcaaa---ttggtagat-atgtgacttttagaaaatggctttcctagTAGTTGGTTATCACAATGGTGGGCTTTGCCTCAAAGATCGAAGTATTGTGGAAGGCCTTTTTCTCAAGGGTGACATTCAAGTACTTTGCACTACAAATAC---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacttataaaactttagttgattgcttaacagatgcaatcctgttccattttcagTTGGTTTTCATAATGGTGGTCTTTGCTTAAAAGACCGAGGTCTTGTTGAGGGGCTTTTCCTCAAGGGTGATCTTCAAGTTCTATGCACAACAAATACTTT
                       gcttaac  putative branch site (score: 3)
                                      tcctgttccattttc  putative PPT
     ataaaactttagtt  TA-rich tract