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...tgtatgctactgttaactctatgattttttcagtaaacgctggggacccttgtgaaaggatttcagtatgttgtaaccacttatgtttgatcccatgcagGCACTAGCAGCAGCATCCAAGACTGTTGATTGTCTAAAAATGGTGCATAGTTTGCATGCAATTTTTCTTGTTGCTGGAGACAATAACA
species | Zea mays |
transcript | GRMZM2G344476_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CGGAAGCTCCAACTTTTAGGCAAGTTTTTGGAGGACAATTCATTGGACAG GCACTAGCAGCAGCATCCAAGACTGTTGATTGTCTAAAAATGGTGCATAGTEST: gi|148956464|gb|EC902291.2|EC902291
genomic: CGGAAGCTCCAACTTTTAGGCAAGTTTTTGGAGGACAATTCATTGGACAGgcaattttca ... tcccatgcagGCACTAGCAGCAGCATCCAAGACTGTTGATTGTCTAAAAATGGTGCATAGT
EST: CGGAAGCTCCAACTTTTAGGCAAGTTTTTGGAGGACAATTCATTGGACAG GCACTAGCAGCAGCATCCAAGACTGTTGATTGTCTAAAAATGGTGCATAGTEST: gi|211119071|gb|FL021982.1|FL021982
genomic: CGGAAGCTCCAACTTTTAGGCAAGTTTTTGGAGGACAATTCATTGGACAGgcaattttca ... tcccatgcagGCACTAGCAGCAGCATCCAAGACTGTTGATTGTCTAAAAATGGTGCATAGT
EST: CGGAAGCTCCAACTTTTAGGCAAGTTTTTGGAGGACAATTCATTGGACAG GCACTAGCAGCAGCATCCAAGACTGTTGATTGEST: gi|149112589|gb|EE191373.2|EE191373
genomic: CGGAAGCTCCAACTTTTAGGCAAGTTTTTGGAGGACAATTCATTGGACAGgcaattttca ... tcccatgcagGCACTAGCAGCAGCATCCAAGACTGTTGATTG
EST: CGGAAGCTCCAACTTTTAGGCAAGTTTTTGGAGGACAATTCATTGGACAG GCACTAGCAGCAGCATCCAAGACTGTTGATTGTCTAAAAATGGTGCATAGTEST: gi|50331303|gb|CO526429.1|CO526429
genomic: CGGAAGCTCCAACTTTTAGGCAAGTTTTTGGAGGACAATTCATTGGACAGgcaattttca ... tcccatgcagGCACTAGCAGCAGCATCCAAGACTGTTGATTGTCTAAAAATGGTGCATAGT
EST: CGGAAGCTCCAACTTTTAGGCAAGTTTTTGGAGGACAATTCATTGGACAG GCACTAGCAGCAGCATCCAAGACTGTTGATTGTCTAAAAATGGTGCATAGTEST: gi|148958992|gb|EE010517.2|EE010517
genomic: CGGAAGCTCCAACTTTTAGGCAAGTTTTTGGAGGACAATTCATTGGACAGgcaattttca ... tcccatgcagGCACTAGCAGCAGCATCCAAGACTGTTGATTGTCTAAAAATGGTGCATAGT
EST: CGGAAGCTCCAACTTTTAGGCAAGTTTTTGGAGGACAATTCATTGGACAG GCACTAGCAGCAGCATCCAAGACTGTTGATTGTCTAAAAATGGTGCATAGTEST: gi|148944150|gb|EC889238.2|EC889238
genomic: CGGAAGCTCCAACTTTTAGGCAAGTTTTTGGAGGACAATTCATTGGACAGgcaattttca ... tcccatgcagGCACTAGCAGCAGCATCCAAGACTGTTGATTGTCTAAAAATGGTGCATAGT
EST: CGGAAGCTCCAACTTTTAGGCAAGTTTTTGGAGGACAATTCATTGGACAG GCACTAGCAGCAGCATCCAAGACTGTTGATTGTCTAANAATGGTGCATAGTEST: gi|91875931|gb|EB405888.1|EB405888
genomic: CGGAAGCTCCAACTTTTAGGCAAGTTTTTGGAGGACAATTCATTGGACAGgcaattttca ... tcccatgcagGCACTAGCAGCAGCATCCAAGACTGTTGATTGTCTAAAAATGGTGCATAGT
EST: CGGAAGCTCCAACTTTTAGGCAAGTTTTTGGAGGACAATTCATTGGACAG GCACTAGCAGCAGCATCCAAGACTGTTTGAT-GTCTAAAAATGGTGCATAG
genomic: CGGAAGCTCCAACTTTTAGGCAAGTTTTTGGAGGACAATTCATTGGACAGgcaattttca ... tcccatgcagGCACTAGCAGCAGCATCCAAGACTGTT-GATTGTCTAAAAATGGTGCATAG
acccttgtgaaaggatttcagtatgttgtaaccacttatgtttgatcccatgcagGCACTAGCAGCAGCATCCAAGACTGTTGATTGTCTAAAAATGGTGCATAGTTTGCATGCAATTTTTCTTGTTGCTGGAGACAATAACA
ttatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtatgctactgttaactctatgattttttcagtaaacgctggggacccttgtgaaaggatttcagtatgttgtaaccacttatgtttgatcccatgcagGCACTAGCAGCAGCATCCAAGACTGTTGATTGTCTAAAAATGGTGCATAGTTTGCATGCAATTTTTCTTGTTGCTGGAGACAATAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - -gctactg
- - - - - - - - - - - - - - - - - - - gctgggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgtttg