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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agggtaaacgagcactacctcacaaatgaccgaccgggtttctagcagccgtcatatatatatcaaccgttgctgatgatgcgtgcattattgactgcagAAATATTTGCTGTGCAACCACGTGGCCCCGTTCGATCCGTCGGCCTCCGACATGCAACAACACGTAGAC

Basic information

species Zea mays
transcript GRMZM2G334225_T01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71771389|gb|DR969326.1|DR969326
EST:     CGTGTGAGAAATTCCTCATGGACACCCTCACTTGCGTGGAGGAGCGAAAG                         AAATATTTGCTGTGCAACCACGTGGCCCCGTTCGATCCGTCGGCCTCCGAC
genomic: CGTGTGAGAAATTCCTCATGGACACCCTCACTTGCGTGGAGGAGCGAAAGgttagttgtt ... ttgactgcagAAATATTTGCTGTGCAACCACGTGGCCCCGTTCGATCCGTCGGCCTCCGAC
EST: gi|74233594|gb|DT641508.1|DT641508
EST:     CGTGTGAGAAATTCCTCATGGACACCCTCACTTGCGTGGAGGAGCGAAAG                         AAATATTTGCTGTGCAACCACGTGGCCCCGTTCGATCCGTCGGCCTCCGAC
genomic: CGTGTGAGAAATTCCTCATGGACACCCTCACTTGCGTGGAGGAGCGAAAGgttagttgtt ... ttgactgcagAAATATTTGCTGTGCAACCACGTGGCCCCGTTCGATCCGTCGGCCTCCGAC
EST: gi|50333189|gb|CO528315.1|CO528315
EST:     CGTGTGAGAAATTCCTCATGGACACCCTCACTTGCGTGGAGGAGCGAAAG                         AAATATTTGCTGTGCAACCACGTGGCCCCGTTCGATCCGTCGGCCTCCGAC
genomic: CGTGTGAGAAATTCCTCATGGACACCCTCACTTGCGTGGAGGAGCGAAAGgttagttgtt ... ttgactgcagAAATATTTGCTGTGCAACCACGTGGCCCCGTTCGATCCGTCGGCCTCCGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagccgtcatatatatatcaaccgttgctgatgatgcgtgcattattgactgcagAAATATTTGCTGTGCAACCACGTGGCCCCGTTCGATCCGTCGGCCTCCGACATGCAACAACACGTAGAC
                                           tattgac  putative branch site (score: 2)
      tcatatatatatcaa  TA-rich tract