1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aagaatgcctttttttttcttcttgaacttccatttaaagttttgaatacacgagaagattgggagtagtttctaacttcaaaatgctgcttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAG
species | Zea mays |
transcript | GRMZM2G330650_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCAEST: gi|60396385|gb|DN229254.1|DN229254
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCAEST: gi|32866170|gb|CF005852.1|CF005852
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: CACAAACTGTTGTTTTTGGAGCTCAAACTGCTGCGACATTAACACAGCAA ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCAEST: gi|71774531|gb|DR972409.1|DR972409
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCCEST: gi|50338100|gb|CO533226.1|CO533226
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCAEST: gi|76286033|gb|DV025601.1|DV025601
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCAEST: gi|21810005|gb|BQ668323.1|BQ668323
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCAEST: gi|71442678|gb|DR823728.1|DR823728
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCAEST: gi|60396054|gb|DN228924.1|DN228924
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCAEST: gi|211141939|gb|FL417378.1|FL417378
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCAEST: gi|87157738|gb|DY402527.1|DY402527
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: ACAAACTGTTGAGACTGGAGCTCAAACTTGCTGCGACATTAACACAGCAA ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCAEST: gi|89754547|gb|DY685289.1|DY685289
genomic: ACAAACTGTTGAGACTGGAGCTCAAAC-TGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGGGACATTAACACAGCAA ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCCEST: gi|7135269|gb|AW498001.1|AW498001
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCAEST: gi|7135591|gb|AW498164.1|AW498164
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: AAACTGTTGAGACTGGAGCTCAAACTGCTGCGCCATTAACNCAGCAA ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCAEST: gi|18166041|gb|BM335880.1|BM335880
genomic: AAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: AGCTCAAACTGCTGCGACATTAACACAGCAA ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCAEST: gi|78074383|gb|DV502817.1|DV502817
genomic: AGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCAEST: gi|78122352|gb|DV540736.1|DV540736
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCAEST: gi|60337886|gb|DN204859.1|DN204859
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCAEST: gi|110510919|gb|EE019261.1|EE019261
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCAEST: gi|148961350|gb|EE012080.2|EE012080
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCAEST: gi|76019098|gb|DT946268.1|DT946268
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
EST: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAA ACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
genomic: CACAAACTGTTGAGACTGGAGCTCAAACTGCTGCGACATTAACACAGCAAgtatgcctct ... ttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCA
aatacacgagaagattgggagtagtttctaacttcaaaatgctgcttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAG
ttctaac putative branch site (score: 1)
ctgctttttt putative PPT
ttttttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagaatgcctttttttttcttcttgaacttccatttaaagttttgaatacacgagaagattgggagtagtttctaacttcaaaatgctgcttttttgtagACAGAGCAAATGAAGAGAATTGGTAATGAGCTAGATACTGTCCACTTCTCACTGAAGAAAGCTAGCCAACTAGTGAAGGAGATTGGTCGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT