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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttgtagcagaagcacgttcaggaacttgaaccaaactcacccttagatgcatgttgttgaattagttactatggagtaattgcttctgttttctctcagGTTCCTCCAACTCTGGCACCGATCGATGCACTCGAGAGATACACTCAGATCTCCAGCCATCCCCTTCATAAGACAAACAAACCAGGCATTTTGTCCATGG

Basic information

species Zea mays
transcript GRMZM2G324540_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G324540_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os10g32880.1 (Oryza sativa), 3'ss of exon 5
---------------------------------------------------------------tttgtagcagaagcacgttcaggaacttgaaccaaactcacc-----------cttagatgcatgttgttgaattag----ttact------atggagtaa---ttgcttctgttttctctcagGTTCCTCCAACTCTGGCACCGATCGATGCACTCGAGAGATACACTCAGATCTCCAGCCATCCCCTTCATAAGACAAACAAACCAGGCATTTTGTCCATGG
                                                                   |||   |       ||| |||    | |  | ||| ||             |   ||  |||||     ||      |||||      |||   |||   ||   |   ||||||| ||||||||||||||| ||||| | || |||||| | |||||||| || ||||||||||| ||||| ||||| |||||||||||||||||||| || || ||||
gtacatatctgtattcatagttatgctacaaacaaggtctaaaacatgcattaatgtttttatccaatagttaagattatctcaagaatgctagctcatctcgccaggacattatttctcagtgtttgttgccatctttacaccttacttttgaaatgagataacagttctctacattttctcacagGTTCCTCCAACTTTGGCATCAATTGATGCAATTGAGAGATATACCCAGATCTCCAGTCATCCACTTCACAAGACAAACAAACCAGGCATCTTATCTATGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60400048|gb|DN232855.1|DN232855
EST:     AACTTACAGAGTGTAATGCCATGCTTTCAGCACAGCGCAAGAAAAGACAG                         GTTCCTCCAACTCTGGCACCGATCGATGCACTCGAGAGATACACTCAGATC
genomic: AACTTACAGAGTGTAATGCCATGCTTTCAGCACAGCGCAAGAAAAGACAGgtatgtgttg ... tttctctcagGTTCCTCCAACTCTGGCACCGATCGATGCACTCGAGAGATACACTCAGATC
EST: gi|60337485|gb|DN204458.1|DN204458
EST:     AACTTACAGAGTGTAATGCCATGCTTTCAGCACAGCGCAAGAAAAGACAG                         GTTCCTCCAACTCTGGCACCGATCGATGCACTCGAGAGATACACTCAGATC
genomic: AACTTACAGAGTGTAATGCCATGCTTTCAGCACAGCGCAAGAAAAGACAGgtatgtgttg ... tttctctcagGTTCCTCCAACTCTGGCACCGATCGATGCACTCGAGAGATACACTCAGATC
EST: gi|148945896|gb|EC891188.2|EC891188
EST:     AACTTACAGAGTGTAATGCCATGCTTTCAGCACAGCGCAAGAAAAGACAG                         GTTCCTCCAACTCTGGCACCGATCGATGCACTCGAGAGATACACTCAGATC
genomic: AACTTACAGAGTGTAATGCCATGCTTTCAGCACAGCGCAAGAAAAGACAGgtatgtgttg ... tttctctcagGTTCCTCCAACTCTGGCACCGATCGATGCACTCGAGAGATACACTCAGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatgcatgttgttgaattagttactatggagtaattgcttctgttttctctcagGTTCCTCCAACTCTGGCACCGATCGATGCACTCGAGAGATACACTCAGATCTCCAGCCATCCCCTTCATAAGACAAACAAACCAGGCATTTTGTCCATGG
                                   ttgcttctgttttctc  CT-rich tract
               aattagtta  TA-rich tract