Sequence
atgc intronic sequence ATGC exonic sequencegtaagagacactaacttattgtacttgagtatttcctttaatcttgtctgttgctaatatcattgtcttcaatactgtagGACTTTTCCAATAAAACTCCTGCTTCAGCTCGTCACAAAAGGGGATGCAATTGCAAGAAGTCGTCGTGTCTAAAAAAATACTGTGAATGTTTTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G322090_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os12g41230.2 (Oryza sativa), 3'ss of exon 6
gtaagagacactaactt-attgtacttgagtatttcctttaatcttgtctgttgctaatatcattgtcttcaatactgtagGACTTTTCCAATAAAACTCCTGCTTCAGCTCGTCACAAAAGGGGATGCAATTGCAAGAAGTCGTCGTGTCTAAAAAAATACTGTGAATGTTTTCAG
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gtaagagccactctctttgttttacttcctt-tctcctttgttacgtgctactgctcatataatcct-tgctatattatagGATGACTCTAACAAAACTCCTGCTTCTTCTCGTCACAAAAGAGGCTGCAATTGTAAGAAGTCATCGTGTTTGAAAAAATACTGCGAATGTTATCAG
upper sequence: GRMZM2G322090_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA11G00920.1 (Glycine max), 3'ss of exon 8
gtaagagacactaacttattgtacttgagtatttcctttaatc--ttg-----tctgttgctaatatcattgtcttcaatactgtagGACTTTTCCAATAAAACTCCTGCTTCAGCTCGTCACAAAAGGGGATGCAATTGCAAGAAGTCGTCGTGTCTAAAAAAATACTGTGAATGTTTTCAG
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gttagaaa-ataaactcg----actt-agtttttcccctaagcaattgaaacatcttttataggtattaattattatctttttgtagGATGACCCAAATAAAACTCCAGCTTCAGCACGACACAAAAGAGGATGCAACTGCAAAAAATCAAGCTGCCTAAAGAAATATTGTGAATGTTATCAG
upper sequence: GRMZM2G322090_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA10G39080.1 (Glycine max), 3'ss of exon 12
gtaagaga--cactaacttattgtacttgagtatttcct-----ttaatcttgtctgttgctaatatcattgtcttcaatactgtagGACTTTTCCAATAAAACTCCTGCTTCAGCTCGTCACAAAAGGGGATGCAATTGCAAGAAGTCGTCGTGTCTAAAAAAATACTGTGAATGTTTTCAG
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gtcagcaaattaatatttaactttattttctcactttctaattttaaaccatttttttttcatatattaattattttttccttgcagGATGACCCTAACAAAACTCCAGCTTCAGCACGACACAAAAGAGGATGTAATTGCAAGAAATCAAGCTGCCTAAAGAAATATTGTGAATGTTATCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32937961|gb|CF042780.1|CF042780EST: CATTTGCTCCTAAAGTCATTCATACATCTGAGCCTGGTATGGACTTAGGG GACTTTTCCAATAAAACTCCTGCTTCAGCTCGTCACAAAAGGGGATGCAAT
genomic: CATTTGCTCCTAAAGTCATTCATACATCTGAGCCTGGTATGGACTTAGGGgtaagagaca ... aatactgtagGACTTTTCCAATAAAACTCCTGCTTCAGCTCGTCACAAAAGGGGATGCAAT
EST:
gi|32932949|gb|CF037761.1|CF037761EST: CATTTGCTCCTAAAGTCATTCATACATCTGAGCCTGGTATGGACTTAGGG GACTTTTCCAATAAAACTCCTGCTTCAGCTCGTCACAAAAGGGGATGCAAT
genomic: CATTTGCTCCTAAAGTCATTCATACATCTGAGCCTGGTATGGACTTAGGGgtaagagaca ... aatactgtagGACTTTTCCAATAAAACTCCTGCTTCAGCTCGTCACAAAAGGGGATGCAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgagtatttcctttaatcttgtctgttgctaatatcattgtcttcaatactgtagGACTTTTCCAATAAAACTCCTGCTTCAGCTCGTCACAAAAGGGGATGCAATTGCAAGAAGTCGTCGTGTCTAAAAAAATACTGTGAATGTTTTCAG
tgctaat putative branch site (score: 2)
taatatcatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagagacactaacttattgtacttgagtatttcctttaatcttgtctgttgctaatatcattgtcttcaatactgtagGACTTTTCCAATAAAACTCCTGCTTCAGCTCGTCACAAAAGGGGATGCAATTGCAAGAAGTCGTCGTGTCTAAAAAAATACTGTGAATGTTTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT