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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtcttgtgttgataatttgataactgtctttccgaatatatcaagttacttgttgcgataaagggaggctaactttttcactcgtgatcgattgtgcagGAGGCTTGGAATAAGTACAATTCTGAAGAGCGCTAGTGGGATAGGTGGTTCTTTATCAATTGTTTACGGGGGACAGGATATTGGCTAGGTATCTCTGTAG

Basic information

species Zea mays
transcript GRMZM2G316635_T02
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12969862|gb|BG266694.1|BG266694
EST:     CTACAATCAGACAGAAATACATTTGTGAGAAGGTGTTTGATCTTCTTAAG                         GAGGCTTGGAATAAGTACAATTCTGAAGAGCGCTAGTGGGATAGGTGGTTC
genomic: CTACAATCAGACAGAAATACATTTGTGAGAAGGTGTTTGATCTTCTTAAGgtgtgttctt ... gattgtgcagGAGGCTTGGAATAAGTACAATTCTGAAGAGCGCTAGTGGGATAGGTGGTTC
EST: gi|21331195|gb|BQ486576.1|BQ486576
EST:     CTACAATCAGACAGAAATACATTTGTGAGAAGGTGTTTGATCTTCTTAAG                         GAGGCTTGGAATAAGTACAATTCTGAAGAGCGCTAGTGGGATAGGTGGTTC
genomic: CTACAATCAGACAGAAATACATTTGTGAGAAGGTGTTTGATCTTCTTAAGgtgtgttctt ... gattgtgcagGAGGCTTGGAATAAGTACAATTCTGAAGAGCGCTAGTGGGATAGGTGGTTC
EST: gi|4775892|gb|AI664895.1|AI664895
EST:     CTACAATCAGACAGAAATACATTTGTGAGAAGGTGTTTGATCTTCTTAAG                         GAGGCTTGGAATAAGTACAATTCTGAAGAGCGCTAGTGGGATAGGTGGTTC
genomic: CTACAATCAGACAGAAATACATTTGTGAGAAGGTGTTTGATCTTCTTAAGgtgtgttctt ... gattgtgcagGAGGCTTGGAATAAGTACAATTCTGAAGAGCGCTAGTGGGATAGGTGGTTC
EST: gi|22542028|gb|BU092466.1|BU092466
EST:     CTACAATCAGACAGAAATACATTTGTGAGAAGGTGTTTGATCTTCTTAAG                         GAGGCTTGGAATAAGTACAATTCTGAAGAGCGCTAGTGGGATAGGTGGTTC
genomic: CTACAATCAGACAGAAATACATTTGTGAGAAGGTGTTTGATCTTCTTAAGgtgtgttctt ... gattgtgcagGAGGCTTGGAATAAGTACAATTCTGAAGAGCGCTAGTGGGATAGGTGGTTC
EST: gi|4624195|gb|AI615028.1|AI615028
EST:     AATCAGACAGAAATACATTTGTGAGAAGGTGTTTGATCTTCTTAAG                         GAGGCTTGGAATAAGTACAATTCTGAAGAGCGCTAGTGGGATAGGTGGTTC
genomic: AATCAGACAGAAATACATTTGTGAGAAGGTGTTTGATCTTCTTAAGgtgtgttctt ... gattgtgcagGAGGCTTGGAATAAGTACAATTCTGAAGAGCGCTAGTGGGATAGGTGGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttacttgttgcgataaagggaggctaactttttcactcgtgatcgattgtgcagGAGGCTTGGAATAAGTACAATTCTGAAGAGCGCTAGTGGGATAGGTGGTTCTTTATCAATTGTTTACGGGGGACAGGATATTGGCTAGGTATCTCTGTAG
                      ggctaac  putative branch site (score: 2)
                         taacttttt  TA-rich tract