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gtaagtcagaatgtcaaaggatactggacatttatggatctgctcaggttttccaaatcattaatgaagtcatgtatctatctatgaacagGAACCTTCTTCGATATGTATATTGGTGACCCCCCTGTTTCAGTTGAGACCAAACACGGCATTGCGCAAAATGTGGCTGGACTCATGAGAAGATGCTAGGA
species | Zea mays |
transcript | GRMZM2G315230_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGATGGCAAACAAATTGGCACTGTCCACAGCAAATATCTCTGCA GAACCTTCTTCGATATGTATATTGGTGACCCCCCTGTTTCAGTTGAGACCAEST: gi|4688464|gb|AI637134.1|AI637134
genomic: TTGATGGCAAACAAATTGGCACTGTCCACAGCAAATATCTCTGCAgtaagtcaga ... ctatgaacagGAACCTTCTTCGATATGTATATTGGTGACCCCCCTGTTTCAGTTGAGACCA
EST: TTGATGGCAAACAAATTGGCACTGTCCACAGCAAATATCTCTGCA GAACCTTCTTCGATATGTATATTGGTGACCCCCCTGTTTCAGTTGAGACCAEST: gi|4730337|gb|AI649503.1|AI649503
genomic: TTGATGGCAAACAAATTGGCACTGTCCACAGCAAATATCTCTGCAgtaagtcaga ... ctatgaacagGAACCTTCTTCGATATGTATATTGGTGACCCCCCTGTTTCAGTTGAGACCA
EST: TTGATGGCAAACAAATTGGCACTGTCCACAGCAAATATCTCTGCA GAACCTTCTTCGATATGTATATTGGTGACCCCCCTGTTTCAGTTGAGACCAEST: gi|113824631|gb|DW943507.1|DW943507
genomic: TTGATGGCAAACAAATTGGCACTGTCCACAGCAAATATCTCTGCAgtaagtcaga ... ctatgaacagGAACCTTCTTCGATATGTATATTGGTGACCCCCCTGTTTCAGTTGAGACCA
EST: AAACAAATTGGCACTGTCCACAGCAAAATATCTCTGCA GAACCTTCTTCGATATGTATATTGGTGACCCCCCTGTTTCAGTTGAGACCA
genomic: AAACAAATTGGCACTGTCCACAGC-AAATATCTCTGCAgtaagtcaga ... ctatgaacagGAACCTTCTTCGATATGTATATTGGTGACCCCCCTGTTTCAGTTGAGACCA
gatctgctcaggttttccaaatcattaatgaagtcatgtatctatctatgaacagGAACCTTCTTCGATATGTATATTGGTGACCCCCCTGTTTCAGTTGAGACCAAACACGGCATTGCGCAAAATGTGGCTGGACTCATGAGAAGATGCTAGGA
cattaat putative branch site (score: 3)
tctatct putative PPT
aaatcattaatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcagaatgtcaaaggatactggacatttatggatctgctcaggttttccaaatcattaatgaagtcatgtatctatctatgaacagGAACCTTCTTCGATATGTATATTGGTGACCCCCCTGTTTCAGTTGAGACCAAACACGGCATTGCGCAAAATGTGGCTGGACTCATGAGAAGATGCTAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG