1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagttcttcccctgaattttctgaaagatatttcataaatgtgtttccatgtatattgagctgactgtcttgtaacattctttggggttatacaatgcagAAAGTGCTGGTCGCAAGCAACGACCTAGCGTTGTATCCACGGCTGAAGGTGGAGCTCAGCATGAGGCAGCCATTGTGCATTCTTGGAGATTGACATGTCA
species | Zea mays |
transcript | GRMZM2G315176_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GATTGGAGGTCGATGGTGGTATTTTACAAGAGGCCCATCTTGCCGCTCTG AAAGTGCTGGTCGCAAGCAACGACCTAGCGTTGTATCCACGGCTGAAGGTGEST: gi|211222390|gb|FL435588.1|FL435588
genomic: GATTGGAGGTCGATGGTGGTATTTTACAAGAGGCCCATCTTGCCGCTCTGgtaagttctt ... tacaatgcagAAAGTGCTGGTCGCAAGCAACGACCTAGCGTTGTATCCACGGCTGAAGGTG
EST: GATTGGAGGTCGATGGTGGTATTTTACAAGAGGCCCATCTTGCCGCTYTG AAAGTGCTGGTYGCAAGCAACGACCTAGCGTTGTATCCACGGCTGAAGGTGEST: gi|166574243|gb|EG291501.1|EG291501
genomic: GATTGGAGGTCGATGGTGGTATTTTACAAGAGGCCCATCTTGCCGCTCTGgtaagttctt ... tacaatgcagAAAGTGCTGGTCGCAAGCAACGACCTAGCGTTGTATCCACGGCTGAAGGTG
EST: ATTTTACAAGAGGCCCATCTTGCCGCTCTG AAAGTGCTGGTCGCAAGCAACGACCTAGCGTTGTATCCACGGCTGAAGGTGEST: gi|32945294|gb|CF050113.1|CF050113
genomic: ATTTTACAAGAGGCCCATCTTGCCGCTCTGgtaagttctt ... tacaatgcagAAAGTGCTGGTCGCAAGCAACGACCTAGCGTTGTATCCACGGCTGAAGGTG
EST: GATTGGAGGTCGATGGTGGTATTTTACAAGAGGCCCATCTTGCCGCTCTG AAAGTGCTGGTCGCAAAAAACGACCTAGCGTTGTATCCACGGCTGAAGGTG
genomic: GATTGGAGGTCGATGGTGGTATTTTACAAGAGGCCCATCTTGCCGCTCTGgtaagttctt ... tacaatgcagAAAGTGCTGGTCGCAAGCAACGACCTAGCGTTGTATCCACGGCTGAAGGTG
tccatgtatattgagctgactgtcttgtaacattctttggggttatacaatgcagAAAGTGCTGGTCGCAAGCAACGACCTAGCGTTGTATCCACGGCTGAAGGTGGAGCTCAGCATGAGGCAGCCATTGTGCATTCTTGGAGATTGACATGTCA
ttgtaac putative branch site (score: 2)
ttatacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcttcccctgaattttctgaaagatatttcataaatgtgtttccatgtatattgagctgactgtcttgtaacattctttggggttatacaatgcagAAAGTGCTGGTCGCAAGCAACGACCTAGCGTTGTATCCACGGCTGAAGGTGGAGCTCAGCATGAGGCAGCCATTGTGCATTCTTGGAGATTGACATGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT