1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ctacggactagtggaagcctgctttcttcaacacaaaataaatatgtttttcttgagttatatttatgcaaagctttgattatctttatttttcatacagGCTAAATGCCTTGACATGCTTCCAGAGGTTCAGAGAGAGAATGTGAAAGCCATCAACAGTGGAGAACAAATTCAGTTTGCTCGAACTGCTCAAATATCTT
species | Zea mays |
transcript | GRMZM2G312738_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGGTTGCTTCAAAAATTAGAGCAATTGCTCAATGGAGAGAGAGTTTGGTT GCTAAATGCCTTGACATGCTTCCAGAGGTTCAGAGAGAGAATGTGAAAGCCEST: gi|22546428|gb|BU098739.1|BU098739
genomic: AGATTGCTTCAAAAATTAGAGCAATTGCTCAATGGAGAGAAAGTTTGGTTgtaagtgctg ... tttcatacagGCTAAATGCCTTGACATGCTTCCAGAGGTTCAGAGAGAGAATGTGAAAGCC
EST: GCTTCAAAAATTAGAGCAATTGCTCAATGGAGAGAAAGTTTGGTT GCTAAATGCCTTGACATGCTTCCAGAGGTTCAGAGAGAGAATGTGAAAGCCEST: gi|87157488|gb|DY402277.1|DY402277
genomic: GCTTCAAAAATTAGAGCAATTGCTCAATGGAGAGAAAGTTTGGTTgtaagtgctg ... tttcatacagGCTAAATGCCTTGACATGCTTCCAGAGGTTCAGAGAGAGAATGTGAAAGCC
EST: AGATTGCTTC-AAAATTAGAGCAATTGCTCAATGGAGAGAAAGTTTGGTT GCTAAATGCCTTGACATGCTTCCAGAGGTTCAGAGAGAGAATGTGAAAGCC
genomic: AGATTGCTTCAAAAATTAGAGCAATTGCTCAATGGAGAGAAAGTTTGGTTgtaagtgctg ... tttcatacagGCTAAATGCCTTGACATGCTTCCAGAGGTTCAGAGAGAGAATGTGAAAGCC
gtttttcttgagttatatttatgcaaagctttgattatctttatttttcatacagGCTAAATGCCTTGACATGCTTCCAGAGGTTCAGAGAGAGAATGTGAAAGCCATCAACAGTGGAGAACAAATTCAGTTTGCTCGAACTGCTCAAATATCTT
ctttgat putative branch site (score: 5)
ttatctttatttttc CT-rich tract
tttgattatctttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctacggactagtggaagcctgctttcttcaacacaaaataaatatgtttttcttgagttatatttatgcaaagctttgattatctttatttttcatacagGCTAAATGCCTTGACATGCTTCCAGAGGTTCAGAGAGAGAATGTGAAAGCCATCAACAGTGGAGAACAAATTCAGTTTGCTCGAACTGCTCAAATATCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA