1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ggttacaacaacagctctcagaagctgctataacaccactatttacaacacagattgaatttttaagtgacatttgactgcatgcatgttattttggtagGAGAGATGTTCCCCCCAAGCTTTACTGTGCCACTGGAGCTGAAGTCTACACTCCGGTATGGCGAAAATCCTCATCAGAGTGCTGCATTCTATGCTGACAA
species | Zea mays |
transcript | GRMZM2G306374_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTCTTATGATTCTGCAGTGTCAGAATGGTTGTGGAAGCAATCAAATAAAG GAGAGATGTTCCCCCCAAGCTTTACTGTGCCACTGGAGCTGAAGTCTACACEST: gi|211434559|gb|FL190551.1|FL190551
genomic: CTCTTATGATTCTGCAGTGTCAGAATGGTTGTGGAAGCAATCAAATAAAGgtagtgtttc ... attttggtagGAGAGATGTTCCCCCCAAGCTTTACTGTGCCACTGGAGCTGAAGTCTACAC
EST: CTCTTATGATTCTGCAGTGTCAGAATGGTTGTGGAAGCAATCAAATAAAG GAGAGATGTTCCCCCCAAGCTTTACTGTGCCACTGGAGCTGAAGTCTACACEST: gi|67028824|gb|CO457573.1|CO457573
genomic: CTCTTATGATTCTGCAGTGTCAGAATGGTTGTGGAAGCAATCAAATAAAGgtagtgtttc ... attttggtagGAGAGATGTTCCCCCCAAGCTTTACTGTGCCACTGGAGCTGAAGTCTACAC
EST: CTCTTATGATTCTGCAGTGTCAGAATGGTTGTGGAAGCAATCAAATAAAG GAGAGATGTTCCCCCCAAGCTTTACTGTGCCACTGGAGCTGAAGTCTACAC
genomic: CTCTTATGATTCTGCAGTGTCAGAATGGTTGTGGAAGCAATCAAATAAAGgtagtgtttc ... attttggtagGAGAGATGTTCCCCCCAAGCTTTACTGTGCCACTGGAGCTGAAGTCTACAC
caacacagattgaatttttaagtgacatttgactgcatgcatgttattttggtagGAGAGATGTTCCCCCCAAGCTTTACTGTGCCACTGGAGCTGAAGTCTACACTCCGGTATGGCGAAAATCCTCATCAGAGTGCTGCATTCTATGCTGACAA
atttgac putative branch site (score: 264)
ttatttt putative PPT
agattgaatttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggttacaacaacagctctcagaagctgctataacaccactatttacaacacagattgaatttttaagtgacatttgactgcatgcatgttattttggtagGAGAGATGTTCCCCCCAAGCTTTACTGTGCCACTGGAGCTGAAGTCTACACTCCGGTATGGCGAAAATCCTCATCAGAGTGCTGCATTCTATGCTGACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - caacagc
- - - - - - - - - - - -gctgcta
- - - - - - - - - - - - - - - - -caccact
- - - - - - - - - - - - - - - - - - - - - - -caacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgc