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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttgttctgtgacgagtctttgttgttcattgttcattctagaagtgaaattagttcttgtgcgtatttgctatatgcgcatgtctgtgcagttcttggttagcatcaaaaaatcataaggttacttgccctgcagGAGGATACTTATGTTGAGTTCTTGAAGCTTCGAGGTGTTCCTCTCACAGAAAGGGAATGCCTCGCAAACACTGATGATGTCATACCGCAG

Basic information

species Zea mays
transcript GRMZM2G303752_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G303752_T03 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g07080.2 (Oryza sativa), 3'ss of exon 7
----gtattttgttctgtgacgagtc--tttgttgttcattgttcattctagaagtgaaattagttcttgtgcgtatttgctatatgc----gcatgtctgtgcagttc-ttggttagcatcaaaaaatcataaggttac--ttgccctgcagGAGGATACTTATGTTGAGTTCTTGAAGCTTCGAGGTGTTCCTCTCACAGAAAGGGAATGCCTCGCAAACACTGATGATGTCATACCGCAG
     |  | || | ||  |  |      | |  ||   | ||| | | |  |||  | ||| |    | ||| ||      | ||||    |    |   | || |   |||  | |     ||||  | ||  | ||   |||  ||| |||| ||||||||||||||||||||||||    ||||||| || ||||| |||||||| ||   | ||||  |||  ||| |  |||| |||
gtacttgctctgctttgacattatctaagtggaagtcagtagttgaatttcaaagacatatttggc--tatgcataccatgcacatgcagtagtgatttgatacaatggattgccttgttagtaaaatgcttagcgctataattgttctgtagGAAGATACTTATGTTGAGTTCTTGAAGAGGAGAGGTGTACCCCTCACTGAAAGGGAGTGTTCCACAAATGCTGTAGATATTGTACCACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtctgtgcagttcttggttagcatcaaaaaatcataaggttacttgccctgcagGAGGATACTTATGTTGAGTTCTTGAAGCTTCGAGGTGTTCCTCTCACAGAAAGGGAATGCCTCGCAAACACTGATGATGTCATACCGCAG
                                           cttgccct  CT-rich tract
                       atcaaaaaatcataa  TA-rich tract