1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcatccttttttttgccacacgtcaaaacattcacaatttgtttaaacaatttatgtaaggtaataaagaggtttataatagtcatctatgttattgcagCTGCTGGACCAGGAAAATGCTTGATAAACCATGGAGGATGTTGGCATGAAACTCGCAACGGAAAAACATTCTCTGCTTGCCAG
species | Zea mays |
transcript | GRMZM2G303631_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CACTTTCAATGGCGTACAATTTAAAGGCGATGGCTACAGCAATTGTGAAC CTGCTGGACCAGGAAAATGCTTGATAAACCATEST: gi|91054221|gb|EB164639.1|EB164639
genomic: CACTTTCAATGGCGTACAATTTAAAGGCGATGGCTACAGCAATTGTGAACgtaatgtctt ... gttattgcagCTGCTGGACCAGGAAAATGCTTGATAAACCAT
EST: CACTTTCAATGGCGTACAATTTAAAGGCGATGGCTACAGCAATTGTGAAC CTGCTGGACCAGGAAAATGCTTGATAAACCATGGAGGATGTTGGCATGAAAEST: gi|211449602|gb|FL033163.1|FL033163
genomic: CACTTTCAATGGCGTACAATTTAAAGGCGATGGCTACAGCAATTGTGAACgtaatgtctt ... gttattgcagCTGCTGGACCAGGAAAATGCTTGATAAACCATGGAGGATGTTGGCATGAAA
EST: CACTTTCAATGGCGTACAATTTAAAGGCGATGGCTACAGCAATTGTGAAC CTGCTGGACCAGGAAAATGCTTGATAAACCATGGAGGATGTTGGCATGAAA
genomic: CACTTTCAATGGCGTACAATTTAAAGGCGATGGCTACAGCAATTGTGAACgtaatgtctt ... gttattgcagCTGCTGGACCAGGAAAATGCTTGATAAACCATGGAGGATGTTGGCATGAAA
aacaatttatgtaaggtaataaagaggtttataatagtcatctatgttattgcagCTGCTGGACCAGGAAAATGCTTGATAAACCATGGAGGATGTTGGCATGAAACTCGCAACGGAAAAACATTCTCTGCTTGCCAG
tttataatagtcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatccttttttttgccacacgtcaaaacattcacaatttgtttaaacaatttatgtaaggtaataaagaggtttataatagtcatctatgttattgcagCTGCTGGACCAGGAAAATGCTTGATAAACCATGGAGGATGTTGGCATGAAACTCGCAACGGAAAAACATTCTCTGCTTGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG