1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...actaaccatcatgaattgaacatatagctcatgatgtcagtctcctgaacagaagcgagaaatttaggatcgttattgtggactgttcactccaatgcagGTTTTGCATCCACAATCGATGAGACCTGCTAGAGAAGGTGATATTCCAGTTAGGGTTAAGAATTCATACAACCCTAAAGCTCCAGGCACCCTTATTACCA
species | Zea mays |
transcript | GRMZM2G300862_T05 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: -ATACTTAACATTTGAAGAGGCC-CAGAACTTGCTTATTTTGGTGCTCAG GGTTTGCATCCACAAT
genomic: CATACTTAACATTTGAAGAGGCCACAGAACTTGCTTATTTTGGTGCTCAGgtactctttc ... tccaatgcagGTTTTGCATCCACAAT
tgaacagaagcgagaaatttaggatcgttattgtggactgttcactccaatgcagGTTTTGCATCCACAATCGATGAGACCTGCTAGAGAAGGTGATATTCCAGTTAGGGTTAAGAATTCATACAACCCTAAAGCTCCAGGCACCCTTATTACCA
ttcactcc CT-rich tract
agaaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actaaccatcatgaattgaacatatagctcatgatgtcagtctcctgaacagaagcgagaaatttaggatcgttattgtggactgttcactccaatgcagGTTTTGCATCCACAATCGATGAGACCTGCTAGAGAAGGTGATATTCCAGTTAGGGTTAAGAATTCATACAACCCTAAAGCTCCAGGCACCCTTATTACCA
-ctaacca
- - - - -catgaat
- - - - - - - - -gaacata
- - - - - - - - - - - - - - - atgatgt
- - - - - - - - - - - - - - - - - - - - - - - - -cagaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggactg