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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcctgtgaggtcaacatttatatggaggattgtgtattcatgtatgctttacatgtcttaataaggcttagtcactggttctgattttattacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAACGGTTCCA

Basic information

species Zea mays
transcript GRMZM2G181151_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 3'ss of exon 7
-----ttcctgtgaggtcaacatttatatggaggattgtgtattcatgtatgctttacatgtcttaataag-gcttagtcactggttctgattttattacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAACGGTTCCA
      | ||||   | |||  |   | |  |   || |  ||  |   ||  ||| |||  || ||| |  ||||| |  ||| ||    |||||  | || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || |
atggtatgctgtagag-caatttacctgttcatttttttccatggagacat-ttttgcatcgctgaatcactgcttatttgctgattac--tttta--atctccagGGTGGTGAAGATGACAACTTTGCTATCGTGTTTGCTGCTATGGGAGTGAATATGGAAACAGCCCAATTCTTCAAACGTGATTTTGAAGAGAACGGGTCAA

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA09G38110.2 (Glycine max), 3'ss of exon 7
ttcctgtgaggtcaacatttatatggaggattgtgtattcatgtatgctttacatgtcttaataaggcttagtcactggttctgattttattacc-tgcagGGTGGTG---AAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAACGGTTCCA
      | |||  |   | |   |      || |     | ||  | |||||||         |     |  |   |   ||  | ||| | |   | |||||||| |   |||| ||||| ||||| || |||||||| ||||||||||| |||||||| || || || || ||||||||||| ||||| ||||| || |   
aattaataaggctattttcttcttattcatttattggaacttgc-tactttacaccaagatgaagaaagtgatttttcaatcgaactttgtcaatatacagGGTGGAGGAGAAGAGGACAATTTTGCCATCGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAGAATGGCT---

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA10G42940.2 (Glycine max), 3'ss of exon 7
---ttcctgtgaggtcaa-catttatatggaggattgtgtattcatgtatgctttacatgtcttaataaggcttagtcactggttctgattttattacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAACGGTTCCA
   |  |||   | | || ||||||  |     ||| | || |  ||||   |||  | |   | | |  | ||  |||    |    |   | |||  |||||||||| ||||| ||||| ||||||||||| ||||| ||||||||||| |||||||| || || || || ||||||||||| ||||| ||||| || || |
gtatagctgactgcttaatcatttactta---aattctttacttctgtactttttgtaaga--tgaaagtgatttttcaaaaat----accatgtta--tgcagGGTGGAGAAGAGGACAATTTTGCTATTGTATTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAGAATGGATCAA

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA18G48280.1 (Glycine max), 3'ss of exon 7
ttcctgtgaggtcaacatttatatggaggattgtgtattcatgtatgctttacatgtcttaataaggcttagtcactggttctgattttattacc-tgcagGGTGGTG---AAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAACGGTTCCA
      | ||   |   | |   |      || |     | ||| | |||||||         |     | ||   |   ||| ||||| | |   | |||||||| |   |||| ||||| ||||| ||||||||||| ||||||||||| |||||||| || || || || ||||||||||| ||||| || || || ||  
-attaataagcctattttcttcttattcatttattggaacttgt-tactttacactaagatgaagaaagtggtttttccatctaattttgtcaatatacaggGTGGAGGAGAAGAGGACAATTTTGCCATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAAAATGGCTC--

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA20G24070.1 (Glycine max), 3'ss of exon 8
----ttcctgtgaggtcaacatttatatggaggattgtgtattcatgtatgctttacatgtcttaataaggcttagtcactggttctgattttattacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAACGGTTCCA
    || |  | || |  |  |||   |    | ||   ||  |        | |  |  ||||  ||||    |   | |  |||  |  | | ||  || ||||||| ||||| ||||| ||||||||||||||||| ||||||||||| |||||||| || || || || ||||| ||||| ||||| ||||| || || |
cttatttccttcagatttatttttgcttaatcgtttacttaaactctctacttctgtacttcttg-taagatgaaagtaatttttcacaaat-acta--tgtagGGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAGCGTGACTTTGAGGAGAATGGATCAA

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 7
lower sequence: AT4G38510.4 (Arabidopsis thaliana), 3'ss of exon 8
ttcctgtgaggtcaacatttatatggaggattgtgtattcatgta-tgctttacatgtcttaataaggcttagtcac-tggttctgattttatta-cctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAACGGTTCCA
 |||| |||  |    |  | ||    |  ||| ||| |  |||| |||  || |||| ||| |||  |    |||| | | ||   || | | |   |||||  |   || ||||| ||||| || |||||||| || || ||||| ||||||||||| || || ||||| || ||||||||||| || ||||| || || |
ctcctttgatttggtaaaatctacaatgagttg-gtagttgtgtaatgccata-atgtatta-taaaacagtatcacattggtccatttatgtgaatttgcagCATCAGGAGGATGATAACTTCGCCATTGTGTTCGCAGCAATGGGTGTGAACATGGAGACTGCACAATTTTTTAAACGTGATTTCGAGGAGAATGGATCGA

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 7
lower sequence: AT1G76030.1 (Arabidopsis thaliana), 3'ss of exon 7
--ttcctgtgaggtcaacattt---atatggaggattgtgtattcatgtatgctttacatgtcttaataaggcttagtcactggttctgattttattacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAACGGTTCCA
  ||  ||| |       ||||    | || ||   |   | ||||    ||  |  |   |  ||  |||| ||  |  ||  ||||  | || || |    ||| |  || ||| ||||| ||||| ||||||||||| |||||||| ||||||||||| |||||||| |||||||| || ||||||||||| || || || |
agttgttgtcaaaattgaatttcttgtttgtagacattcctcttcaacgttggctgtctcataatatcaaggattc-tttctcattcttgtgtttttcc----agGATCATGGAGAGGACAATTTTGCAATTGTGTTTGCAGCTATGGGTGTGAACATGGAGACAGCTCAGTTCTTCAAGCGAGATTTTGAAGAAAATGGATCAA

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 7
lower sequence: AT1G20260.1 (Arabidopsis thaliana), 3'ss of exon 7
--ttcctgtgaggtcaacatttatatggaggattgtgt----attcatgtatgctttacatgtcttaataaggcttagtcactggttctgattttattacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAACGGTTCCA
   ||   |    | || ||| |||| |  |   || |    |||| ||| |  |||   |  |||  |||  ||   | | |     ||  ||| |      |||| |  || ||| ||||| ||||| ||||| ||||| |||||||| || |||||||| |||||||| || ||||| |||||||||||||| || || || |
tactcaacttctatgaagattgatatagcagtcagtctctcaattcctgtgtagttttgtttgctttgtaaa-ctccattattaacattgtgtttttc-----cagGATCATGGAGAGGACAATTTTGCAATTGTTTTTGCAGCTATGGGTGTAAACATGGAGACAGCTCAGTTTTTCAAGCGTGATTTTGAAGAAAATGGATCGA

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 7
lower sequence: Vv18s0001g01020.t01 (Vitis vinifera), 3'ss of exon 7
---ttcctgtgaggtcaacatttatatggaggattgtgtattcatgtatgctttacatgtcttaataaggcttagtcactggttctgattttatta--cctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAACGGTTCCA
   ||| | |  |  | ||  ||   ||     || ||| || || | |   ||  || |  | | ||    || |  ||  |  |  ||   ||     |  ||| ||  | ||| ||||| || || || || ||||||||||||||||| |||||||||||||| ||||| || || ||||||||||| || || || ||||
ccgttcatttctgtcctaccctt---tgtccacttctgt-tttatatttttcttttatctgattaaaatatgtaatt-ctcatattatttgccttgagtttatagGATGAGGTAGAGGACAATTTCGCCATCGTCTTTGCTGCTATGGGAGTAAACATGGAAACAGCACAATTTTTTAAGCGTGATTTTGAGGAAAATGGATCCA

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 7
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 7
ttcctgtgaggtcaacatttatatggaggattgtgtattcatgtatgctttacatgtcttaataaggctt--agtcactggttctgattttattacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAACGGTTCCA
    ||| |  | | ||||||| |      |  | ||||    |    ||||    | || |    |||   ||  |    || |    || | || |||||| ||  ||||| ||||||||||| ||||| ||||| ||||||||||| |||||||| || || || || || ||||||||||| || || || || || |
--gatgttaaatgaccatttatttcctttttattttattttctttctttttatcaattttgaacttgctatgagatatcatttttctacttttaacttgcagGATGTGGAAGAGGACAACTTTGCCATTGTTTTTGCAGCTATGGGAGTAAACATGGAGACTGCACAGTTTTTTAAACGTGATTTCGAGGAAAATGGATCAA

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 7
lower sequence: PP1S100_117V6.1 (Physcomitrella patens), 3'ss of exon 7
--ttcctgtgaggtcaac-atttatatggaggattgtgtattcatgtatgctttacatgtcttaataaggcttagtcactggttctgattttattacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAACGGTTCCA
  |     |  | ||    |||  | |||  |||    | |  ||    |    |     || | ||| | | |          |   ||   |   | | | |     |  || ||||| ||   |||||| ||||| ||||||||||| |||||||| ||||||   ||||||||||||||||| || || ||||| |   
cctaagcatttgttcttttattggtttggttgataccttttctataagcgtggaaggctcctgagtaatgataaaatgtgttggcgtgttccttcgacagGATGAACACGGCGAAGACAATTTCTGTATTGTTTTTGCAGCTATGGGAGTTAACATGGAGACAGCTACCTTCTTCAAACGTGATTTCGAGGAAAACGGGT---

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 7
lower sequence: PP1S425_12V6.1 (Physcomitrella patens), 3'ss of exon 6
ttcctgtgaggtcaacatttatatggaggattgtgtattcatgtatgctttacatgtcttaataaggcttagtcactggttctgattttattacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAACGGTTCCA-----------------------------
                                                                                                   |   ||||||   |||||||||  ||| || || |||||||||||||| |||||||| ||||||   ||||||||||||||||| ||||| || || || |                             
---------------------------------------------------------------------------------------------------gcccggtgaa---gacaacttttgtatcgttttcgctgctatgggagTTAACATGGAGACAGCTACTTTCTTCAAACGTGATTTCGAAGAAAATGGATCTATGGAGAGAGTGACACTTTTTCTCAACTTG

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 7
lower sequence: EFJ11911 (Selaginella moellendorffii), 3'ss of exon 6
ttcctgtgaggtcaacatttatatggaggattgtgtattcatgtatgctttacatgtcttaataaggcttagtcactggttctgattttattacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAACGGTTCCA
                        | |  |||||   ||   || |   ||   | | ||  | || || |         |  | || | |    | ||| ||| ||  || ||||||||||| || || ||||| |||||||| ||||||||||| || || || || |||||| | |||||||| || || || || |
------------------------gtacaattgt---tttccgtttatcttctgtctgttgttgagactga---------tgagtttctttcgtatccagCGTGATGTTGAAGACAACTTTGCAATCGTCTTTGCAGCTATGGGTGTGAACATGGAGACTGCACAGTTTTTCAAAAGGGATTTTGAGGAAAATGGATCGA

upper sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 7
lower sequence: EFJ13375 (Selaginella moellendorffii), 3'ss of exon 6
ttcctgtgaggtcaacatttatatggaggattgtgtattcatgtatgctttacatgtcttaataaggcttagtcactggttctgattttattacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAACGGTTCCA
                                  ||| |  ||| | |  |  || |  |  |  |   | |  |||| |   | || | |    | ||| ||| ||  || ||||||||||| || || ||||| |||||||| ||||||||||| || || || || |||||| | |||||||| || || || || |
----------------------------------gtacttttgttttccgtttatcttctg-tctgttgttgagactgatga-gtttctttcgtatccagCGTGATGTTGAAGACAACTTTGCAATCGTCTTTGCAGCTATGGGTGTGAACATGGAGACTGCACAGTTTTTCAAAAGAGATTTTGAGGAAAATGGATCGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32908718|gb|CF013531.1|CF013531
EST:     GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|60352515|gb|DN219488.1|DN219488
EST:     GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|32945519|gb|CF050338.1|CF050338
EST:     GTCGTCAGGCCGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|31360502|gb|CD444859.1|CD444859
EST:     GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|32933270|gb|CF038082.1|CF038082
EST:     GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|60394888|gb|DN227757.1|DN227757
EST:     GCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|67028686|gb|CO457435.1|CO457435
EST:     GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|26557381|gb|CA829616.1|CA829616
EST:     GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|32944897|gb|CF049716.1|CF049716
EST:     GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|32846162|gb|CD985843.1|CD985843
EST:     GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|32933397|gb|CF038209.1|CF038209
EST:     GTCGTCAGGCTGGCCTTGTGAGGACATTGGAGAAAGGAAAGCATGCAGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|32942779|gb|CF047598.1|CF047598
EST:     GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|32931129|gb|CF035941.1|CF035941
EST:     GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGCCTTGTGAAGACATTGGAGAAAGGAAAGCATGCAGAGgtagctaatg ... ttacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctttacatgtcttaataaggcttagtcactggttctgattttattacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAACGGTTCCA
                                  ttctgat  putative branch site (score: 3)
                                        ttttatt  CT-rich tract
                                  ttctgattttatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttcctgtgaggtcaacatttatatggaggattgtgtattcatgtatgctttacatgtcttaataaggcttagtcactggttctgattttattacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAACGGTTCCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA