Sequence
atgc intronic sequence ATGC exonic sequence...ttactcagttcatgatcaatccatcacttaggagtgcccaactaatatgcaaggcgaagctgaacttgtctactttttgctgtcattgttcacattgcagTTTGGAGAAGTAGACATTGATGGCTCACTAGTCGCTGCACAAACCGCTGGAGCTGAGGACATAATGATGCTAAATAACGGCTGCCTTTGTTGCACTGTGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G180418_T03 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g55630.1 (Oryza sativa), 3'ss of exon 2
ttactcagttcatgatcaatccatcacttaggagtgcccaactaatatgcaaggcgaagctg---aact--tgtctac-tttttgctgtcat-tgttcacattgcagTTTGGAGAAGTAGACATTGATGGCTCACTAGTCGCTGCACAAACCGCTGGAGCTGAGGACATAATGATGCTAAATAACGGCTGCCTTTGTTGCACTGTGC
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-------aataatcattagtcaataaggttggctaaaactagcaagatgaaggccacagctacaaaatcagtgcttacaccatttatgtaatgtgtctcaattgcagTATGGAGAAGTTGATATTGATGGTTCATTAGTTGCTGCACAAACTGCTGGAGCTGAGGACATAATGATGCTAAATAATGGGTGCCTTTGCTGCACTGTTC
upper sequence: GRMZM2G180418_T03 (Zea mays), 3'ss of exon 7
lower sequence: AT1G15730.1 (Arabidopsis thaliana), 3'ss of exon 2
ttactcagttcatgatcaatccatcacttaggagtgcccaactaatat-gcaaggcgaagctgaacttgtctactttttgctgtcattgttcacattgcagTTTGGAGAAGTAGACATTGATGGCTCACTAGTCGCTGCACAAACCGCTGGAGCTGAGGACATAATGATGCTAAATAACGGCTGCCTTTGTTGCACTGTGC
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--------------------gtattgtctgagaa-gctgaatagagattgttttatgttttatggtttcactaatttgttctgaaatg--tgaattctcagTTTGGTGAAGTCGACATTGATGGATCACTTGTGGCAGCTCAAACTGCGGGAGCGGAGGATATAATGATGCTTAACAATGGCTGTCTGTGTTGTACTGTTA
upper sequence: GRMZM2G180418_T03 (Zea mays), 3'ss of exon 7
lower sequence: AT1G80480.1 (Arabidopsis thaliana), 3'ss of exon 2
ttactcagttcatgatcaatccatcacttaggagtgcccaactaatatgcaaggcgaagctgaacttgtctactttttgctgtcattgttcacattgcagTTTGGAGAAGTAGACATTGATGGCTCACTAGTCGCTGCACAAACCGCTGGAGCTGAGGACATAATGATGCTAAATAACGGCTGCCTTTGTTGCACTGTGC
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----------------------gttagcttattatcctcgcctgaattcagttataatggtgttgctttctaattcatgtt-tcatgtgaattctctcagTTTGGTGAAGTTGACATTGATGGGTCACTTGTTGCTTCTAAATCTATTGGAGCTGAGGATATTGTGATGCTCAACAATGGCTGCCTTTGTTGCACTGTTA
upper sequence: GRMZM2G180418_T03 (Zea mays), 3'ss of exon 7
lower sequence: Vv09s0002g08260.t01 (Vitis vinifera), 3'ss of exon 2
ttactcagttcatgatcaatccatcacttaggagtgcccaactaatatgcaa--ggcgaagctgaacttgtctactttttgctgtcattgttcacattgcagTTTGGAGAAGTAGACATTGATGGCTCACTAGTCGCTGCACAAACCGCTGGAGCTGAGGACATAATGATGCTAAATAACGGCTGCCTTTGTTGCACTGTGC
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catcttgtttaaaaatttactagttaattaagacctggtgcttgtggtgccatcatcgaaatggg--ttatctaaattcacatccttttgttgactttgcagTATGGTGAAGTCGACATCGATGGTTCTCTAGTTGCTGCAAAGACTACTGGGGCAGAGGACATAATTATGCTCAATAATGGTTGTCTCTGCTGCACTGTGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|74243279|gb|DT651193.1|DT651193EST: ACATCTTGACTGCCCACCATGGAAAGCGAATTGCTGTTATTGAAAATGAG TTTGGAGAAGTAGACATTGATGGCTCACTAGTCGCTGCACAAACCGCTGGA
genomic: ACATCTTGACTGCCCACCATGGAAAGCGAATTGCTGTTATTGAAAATGAGgtatgatcat ... cacattgcagTTTGGAGAAGTAGACATTGATGGCTCACTAGTCGCTGCACAAACCGCTGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatgcaaggcgaagctgaacttgtctactttttgctgtcattgttcacattgcagTTTGGAGAAGTAGACATTGATGGCTCACTAGTCGCTGCACAAACCGCTGGAGCTGAGGACATAATGATGCTAAATAACGGCTGCCTTTGTTGCACTGTGC
tacttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttactcagttcatgatcaatccatcacttaggagtgcccaactaatatgcaaggcgaagctgaacttgtctactttttgctgtcattgttcacattgcagTTTGGAGAAGTAGACATTGATGGCTCACTAGTCGCTGCACAAACCGCTGGAGCTGAGGACATAATGATGCTAAATAACGGCTGCCTTTGTTGCACTGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA