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...tattgtttatcagacaatgtatctcagtccaattgccttgtctttttggcctagtgtttctgaaaccatgcatctcagtccaataaactattatttttagGTAGTGGAAGCACATCTTTCTGGAATCAAATATTTACTTCCAATGAGGATCGAACACATGCTCCTGCAAGAGATAACACAGCAAACAAATCTTATGCTAT
species | Zea mays |
transcript | GRMZM2G180335_T03 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGGGTACGGCCTGCTGCTGAGGCAGAGAGACCAGGATCTTCTG GTAGTGGAAGCACATCTTTCTGGAATCAAATATTTACTTTCCA-TGAAGATEST: gi|211302452|gb|FL244058.1|FL244058
genomic: GGGGTACGGCCTGCTGCTGAGGCAGAGAGACCAGGATCTTCTGgtaagaaatt ... ttatttttagGTAGTGGAAGCACATCTTTCTGGAATCAAATATTTACTT-CCAATGAGGAT
EST: GGGGTACGGCCTGCTGCTGAGGCAGAGAGACCAGGATCTTCTG GTAGTGGAAGCACATCTTTCTGGAATCAAATATTTACTTCCAATGAGGATCEST: gi|78087100|gb|DV515493.1|DV515493
genomic: GGGGTACGGCCTGCTGCTGAGGCAGAGAGACCAGGATCTTCTGgtaagaaatt ... ttatttttagGTAGTGGAAGCACATCTTTCTGGAATCAAATATTTACTTCCAATGAGGATC
EST: GGGGTACGGCCTGCTGCTGAGGCAGAGAGACCAGGATCTTCTG GTAGTGGAAGCACATCTTTCTGGAATCAAATATTTACTTCCAATGAGGATC
genomic: GGGGTACGGCCTGCTGCTGAGGCAGAGAGACCAGGATCTTCTGgtaagaaatt ... ttatttttagGTAGTGGAAGCACATCTTTCTGGAATCAAATATTTACTTCCAATGAGGATC
ttggcctagtgtttctgaaaccatgcatctcagtccaataaactattatttttagGTAGTGGAAGCACATCTTTCTGGAATCAAATATTTACTTCCAATGAGGATCGAACACATGCTCCTGCAAGAGATAACACAGCAAACAAATCTTATGCTAT
ttattttt CT-rich tract
tccaataaactattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattgtttatcagacaatgtatctcagtccaattgccttgtctttttggcctagtgtttctgaaaccatgcatctcagtccaataaactattatttttagGTAGTGGAAGCACATCTTTCTGGAATCAAATATTTACTTCCAATGAGGATCGAACACATGCTCCTGCAAGAGATAACACAGCAAACAAATCTTATGCTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA