1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttaggttgaatactactgctaattgttgttccacttcctgattgtgttgccgaaagctaaatctctacgacgacgacaacggcggcgatggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAATACACGGTCCTCTATGCGTCCCAACCGTCTGGTTTGCTGGAGAGCCCTTC
species | Zea mays |
transcript | GRMZM2G179737_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CGTCTTCTGTAGCGGCGGGTTCGAGAACCCAGGCACTGCGAAATCAGAAG GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTGGGGAGCCAAATEST: gi|149110591|gb|EE190498.2|EE190498
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAATEST: gi|71432608|gb|DR813658.1|DR813658
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: CGTCTTCTGTAGCGGCGGGGTCAAGAATCCAGGCACTGCGAAATCAGAAG GAGAGCTGCTTTCEST: gi|19350892|gb|BM895424.1|BM895424
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTC
EST: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTEST: gi|19351534|gb|BM896066.1|BM896066
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTT
EST: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACEST: gi|101390191|gb|EB817028.1|EB817028
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGAC
EST: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAATEST: gi|60353776|gb|DN220749.1|DN220749
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG GAGAGTTGCTTTCCCAGCTTGTGGACTTGCTGGACTTGTCGGGAGCCAAATEST: gi|83279335|gb|DV943343.1|DV943343
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAATEST: gi|149021621|gb|EE045803.2|EE045803
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAATEST: gi|148969450|gb|EE020256.2|EE020256
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAATEST: gi|60358592|gb|DN225565.1|DN225565
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAATEST: gi|149087736|gb|EE287093.2|EE287093
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAATEST: gi|78087095|gb|DV515488.1|DV515488
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAATEST: gi|211079592|gb|FK945962.1|FK945962
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAATEST: gi|88758213|gb|DY542354.1|DY542354
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAATEST: gi|32836777|gb|CD976455.1|CD976455
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: CGTCTTCTGTAGCGGCGGGTTCGAGAACCCAGGCACTGCGAAATCAGAAG GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAATEST: gi|60398214|gb|DN231030.1|DN231030
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG GAGAGTTGCTTTCCCAGCTTGTGGACTTGCTGGACTTGTCGGGAGCCAAATEST: gi|7216937|gb|AW563074.1|AW563074
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAATEST: gi|78087096|gb|DV515489.1|DV515489
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAATEST: gi|91048207|gb|EB158625.1|EB158625
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAATEST: gi|60398588|gb|DN231404.1|DN231404
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG GAGAGTTGCTTTCCCAGCTTGTGGACTTGCTGGACTTGTCGGGAGCCAAATEST: gi|149110590|gb|EE294202.2|EE294202
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
EST: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAG GAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
genomic: CGTCTTCTGTAGCGGCGGGTTCGAGAATCCAGGCACTGCGAAATCAGAAGgttaggttga ... ggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAAT
tgttgccgaaagctaaatctctacgacgacgacaacggcggcgatggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAATACACGGTCCTCTATGCGTCCCAACCGTCTGGTTTGCTGGAGAGCCCTTC
agctaaa putative branch site (score: 3)
taaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaggttgaatactactgctaattgttgttccacttcctgattgtgttgccgaaagctaaatctctacgacgacgacaacggcggcgatggcaccgcagGAGAGCTGCTTTCCCAGCTTGTGGACTCGCTGGACTTGTCGGGAGCCAAATACACGGTCCTCTATGCGTCCCAACCGTCTGGTTTGCTGGAGAGCCCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA