Sequence
atgc intronic sequence ATGC exonic sequencegtgaggtgccatggacatgaagtatcacatcttctcggtgtctagcagcaactgatagtgttctttagcaggcttggtaccggtttaaatggataaggtttctccttgtggcccatcatagaaattttgttgcagGATTAACGCTTCATCCAGATCGATCATAAAAGCAAATATAATCTACC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G179097_T08 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os04g41100.3 (Oryza sativa), 3'ss of exon 7
-------------------gtgaggtgccatggacatgaagtatcacatcttctcggtgtctagcagcaactgatagtgttctttagcaggcttggtaccggtttaaatggataaggtttctccttgtggcccatcatagaaattttgttgcagGATTAACGCTTCATCCAGATCGATCATAAAAGCAAATATAATCTACC--------------------------------------------------------
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gtcagatacactctgaggtgagatgtgccatggacatgaagtatcacg-catcttggtgtctaccagcaactgatagtgttctttagcaggcatggtgctggtttaagttgata-ggtacct------ggcccatcatagaaattttgttgcagGATTAAC--TCCAACCAGATTGATCATAAAAGCAG-TCTAATCTGCCTGCATCGTAAGGTGTGGCATGTTGGCTTTTATTGGTTAACAGCAGTTTCACCTTTG
upper sequence: GRMZM2G179097_T08 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os04g41100.1 (Oryza sativa), 3'ss of exon 7
--gtgaggtgccatggacatgaagtatcacatcttctcggtgtctagcagcaactgatagtgttctttagcaggcttggtaccggtttaaatggataaggtttctccttgtggcccatcatagaaattttgttgcagGATTAACGCTTCATCCAGATCGATCATAAAAGCAAATATAATCTACC
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gtgagatgtgccatggacatgaagtatcacg-catcttggtgtctaccagcaactgatagtgttctttagcagGCATGGTGCTGGTTTAAGTTGATA-GGTACCT------GGCCCATCATAGAAATTTTGTTGCAGGATTAAC--TCCAACCAGATTGATCATAAAAGCAG-TCTAATCTGC-
upper sequence: GRMZM2G179097_T08 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os04g41100.4 (Oryza sativa), 3'ss of exon 7
--gtgaggtgccatggacatgaagtatcacatcttctcggtgtctagcagcaactgatagtgttctttagcaggcttggtaccggtttaaatggataaggtttctccttgtggcccatcatagaaattttgttgcagGATTAACGCTTCATCCAGATCGATCATAAAAGCAAATATAATCTACC
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gtgagatgtgccatggacatgaagtatcacg-catcttggtgtctaccagcaactgatagtgttctttagCAGGCATGGTGCTGGTTTAAGTTGATA-GGTACCT------GGCCCATCATAGAAATTTTGTTGCAGGATTAAC--TCCAACCAGATTGATCATAAAAGCAG-TCTAATC----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|166596553|gb|EG191324.1|EG191324EST: GCTTCACACTGAAATCCTGAGTTCATGAGGTTAGATATCTTCTGAG GATTAACGCTTCATCCAGATCGATCATAAAAGCAAATATAATCTACC
genomic: GCTTCACACTGAAATCCTGAGTTCATGAGGTTAGATATCTTCTGAGgtgaggtgcc ... tttgttgcagGATTAACGCTTCATCCAGATCGATCATAAAAGCAAATATAATCTACC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cggtttaaatggataaggtttctccttgtggcccatcatagaaattttgttgcagGATTAACGCTTCATCCAGATCGATCATAAAAGCAAATATAATCTACC
ttttgtt CT-rich tract
atcatagaaatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgaggtgccatggacatgaagtatcacatcttctcggtgtctagcagcaactgatagtgttctttagcaggcttggtaccggtttaaatggataaggtttctccttgtggcccatcatagaaattttgttgcagGATTAACGCTTCATCCAGATCGATCATAAAAGCAAATATAATCTACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA