1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tatgtattcttcaattgggtatagttagctacttatttattccactcaagagctcagagtttgtgaaactcactacgattgttgtataacacgtctgcagCTAAGCTGTGGCTGCTTCAAGATAGGAAGCTTGATGGCTGTCAGCTTATTGTACCTAAGTGACTAAATTTTGTGGAGGGCCTTCAAAAGTGTTCATCTCT
species | Zea mays |
transcript | GRMZM2G179097_T03 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATGCCTTTTGCTTTCATCAGGAAATCAATGGCATTAATACAACTTAGAAG CTAAAGCTGTGGCTGCTTCEST: gi|113825496|gb|DW945395.1|DW945395
genomic: ATGCCTTTTGCTTTCATCAGGAAATCAATGGCATTAATACAACTTAGAAGgtaatgtatg ... acgtctgcagCTAA-GCTGTGGCTGCTTC
EST: ATGCCTTTTGCTTTCATCAGGAAATCAATGGCATTAATACAACTTAGAAG CTAAGCTGTGGCTGC
genomic: ATGCCTTTTGCTTTCATCAGGAAATCAATGGCATTAATACAACTTAGAAGgtaatgtatg ... acgtctgcagCTAAGCTGTGGCTGC
tcaagagctcagagtttgtgaaactcactacgattgttgtataacacgtctgcagCTAAGCTGTGGCTGCTTCAAGATAGGAAGCTTGATGGCTGTCAGCTTATTGTACCTAAGTGACTAAATTTTGTGGAGGGCCTTCAAAAGTGTTCATCTCT
ttgtataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgtattcttcaattgggtatagttagctacttatttattccactcaagagctcagagtttgtgaaactcactacgattgttgtataacacgtctgcagCTAAGCTGTGGCTGCTTCAAGATAGGAAGCTTGATGGCTGTCAGCTTATTGTACCTAAGTGACTAAATTTTGTGGAGGGCCTTCAAAAGTGTTCATCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG