1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatgactttgtactaacagctatcatgttcctttttccttttaaatgtgcaagagtttgtttaagctgtctatgtttgtagGGAGATAAAGAATTATCTTGTTCAGTTTATGAAAAGGCCATCGCTGCTGAGAAGGGAAAGGAACAGAGCCAGCTCTTGCCGACGTTGCTTATTCAGTACT
species | Zea mays |
transcript | GRMZM2G178294_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGGCTTTCTAGAGGCCATCGTGAAGCATTCTAATATGGAACACCGACTG GGAGATAAAGAATTATCTTGTTCAGTTTATGAAAAGGCCATCGCTGCTGAGEST: gi|60399477|gb|DN232289.1|DN232289
genomic: CTGGCTTTCTAGAGGCCATCGTGAAGCATTCTAATATGGAACACCGACTGgtatgacttt ... atgtttgtagGGAGATAAAGAATTATCTTGTTCAGTTTATGAAAAGGCCATCGCTGCTGAG
EST: CTGGCTTTCTAGAGGCCATCGTGAAGCATTCTAATATGGAACACCGACTG GGAGATAAAGAATTATCTTGTTCAGTTTATGAAAAGGCCATCGCTGCTGAGEST: gi|211296491|gb|FL380959.1|FL380959
genomic: CTGGCTTTCTAGAGGCCATCGTGAAGCATTCTAATATGGAACACCGACTGgtatgacttt ... atgtttgtagGGAGATAAAGAATTATCTTGTTCAGTTTATGAAAAGGCCATCGCTGCTGAG
EST: CTGGCTTTCTAGAGGCCATCGTGAAGCATTCTAATATGGAACACCGACTG GGAGATAAAGAATTATCTTGTTCAGTTTATGAAAAGGCCATCGCTGCTGAGEST: gi|31351050|gb|CD435407.1|CD435407
genomic: CTGGCTTTCTAGAGGCCATCGTGAAGCATTCTAATATGGAACACCGACTGgtatgacttt ... atgtttgtagGGAGATAAAGAATTATCTTGTTCAGTTTATGAAAAGGCCATCGCTGCTGAG
EST: CTGGCTTTCTAGAGGCCATCGTGAAGCATTCTAATATGGAACACCGACTG GGAGATAAAGAATTATCTTG
genomic: CTGGCTTTCTAGAGGCCATCGTGAAGCATTCTAATATGGAACACCGACTGgtatgacttt ... atgtttgtagGGAGATAAAGAATTATCTTG
gttcctttttccttttaaatgtgcaagagtttgtttaagctgtctatgtttgtagGGAGATAAAGAATTATCTTGTTCAGTTTATGAAAAGGCCATCGCTGCTGAGAAGGGAAAGGAACAGAGCCAGCTCTTGCCGACGTTGCTTATTCAGTACT
tttttccttttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgactttgtactaacagctatcatgttcctttttccttttaaatgtgcaagagtttgtttaagctgtctatgtttgtagGGAGATAAAGAATTATCTTGTTCAGTTTATGAAAAGGCCATCGCTGCTGAGAAGGGAAAGGAACAGAGCCAGCTCTTGCCGACGTTGCTTATTCAGTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC