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...tatgaatccagtaaaaaggtaaaacaaattttaatttgggacggagggagtatttagtatcaagcagccctttcatcttgagctaaacatgattttatagGTACCCAGGTCATCTAAACAGCTCTATGAAGACAATGAGTACGCACTCTACACCATAACACTTTTTGCTAAGGTTGTTGACAACTTTAAGGTCCGTGCTC
species | Zea mays |
transcript | GRMZM2G177912_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACTCCCAAAAAGACTGGTTGTCAAGCTATGAATCACTCGACACATTTGTG GTACCCAGGTCATCTAAACAGCTCTATGAAGACAATGAGTAEST: gi|67016433|gb|CO445182.1|CO445182
genomic: ACTCCCAAAAAGACTGGTTGTCAAGCTATGAATCACTCGACACATTTGTGgtaatgttac ... gattttatagGTACCCAGGTCATCTAAACAGCTCTATGAAGACAATGAGTA
EST: ACTCCCAAAAAGACTGGTTGTCAAGCTATGAATCACTCGACACATTTGTG GTACCCAGGTCATCTAAACAGCTCTATGAAGACAATGAGTACGCACTCTATEST: gi|67042528|gb|CO468783.1|CO468783
genomic: ACTCCCAAAAAGACTGGTTGTCAAGCTATGAATCACTCGACACATTTGTGgtaatgttac ... gattttatagGTACCCAGGTCATCTAAACAGCTCTATGAAGACAATGAGTACGCACTCTAC
EST: ACTCCCAAAAAGACTGGTTGTCAAGCTATGAATCACTCGACACATTTGTG GTACCCAGGTCATCTAAACAGCTCTATGAAGACAATGAGTACGCACTCTACEST: gi|148969238|gb|EE019992.2|EE019992
genomic: ACTCCCAAAAAGACTGGTTGTCAAGCTATGAATCACTCGACACATTTGTGgtaatgttac ... gattttatagGTACCCAGGTCATCTAAACAGCTCTATGAAGACAATGAGTACGCACTCTAC
EST: ACTCCCAAAAAGACTGGTTGTCAAGCTATGAATCACTCGACACATTTGTG GTACCCAGGTCATCTAAACAGCTCTATGAAGACAATGAGTACGCACTCTACEST: gi|37397643|gb|CF636126.1|CF636126
genomic: ACTCCCAAAAAGACTGGTTGTCAAGCTATGAATCACTCGACACATTTGTGgtaatgttac ... gattttatagGTACCCAGGTCATCTAAACAGCTCTATGAAGACAATGAGTACGCACTCTAC
EST: ACTCGACACATTTGTG GTACCCAGGTCATCTAAACAGCTCTATGAAGACAATGAGTACGCACTCTACEST: gi|76288290|gb|DV027858.1|DV027858
genomic: ACTCGACACATTTGTGgtaatgttac ... gattttatagGTACCCAGGTCATCTAAACAGCTCTATGAAGACAATGAGTACGCACTCTAC
EST: ACTCCCAAAAAGACTGGTTGTCAAGCTATGAATCACTCGACACATTTGTG GT-C--A--TC-T--AAACAGCTCTATGAAGACAATGAGTACGCACTCTAC
genomic: ACTCCCAAAAAGACTGGTTGTCAAGCTATGAATCACTCGACACATTTGTGgtaatgttac ... gattttatagGTACCCAGGTCATCTAAACAGCTCTATGAAGACAATGAGTACGCACTCTAC
gggagtatttagtatcaagcagccctttcatcttgagctaaacatgattttatagGTACCCAGGTCATCTAAACAGCTCTATGAAGACAATGAGTACGCACTCTACACCATAACACTTTTTGCTAAGGTTGTTGACAACTTTAAGGTCCGTGCTC
agctaaa putative branch site (score: 247)
taaacatgattttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgaatccagtaaaaaggtaaaacaaattttaatttgggacggagggagtatttagtatcaagcagccctttcatcttgagctaaacatgattttatagGTACCCAGGTCATCTAAACAGCTCTATGAAGACAATGAGTACGCACTCTACACCATAACACTTTTTGCTAAGGTTGTTGACAACTTTAAGGTCCGTGCTC
- tgaatcc
- - - - - gtaaaaag
- - - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caagcag