1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgtgtttgtgtttgcatttactcccatcatagcgatttttatgcagtctttgtggtaattcttgtgtttttagATTGATTACCTTCACAGAACCGGGAGAACTGCACGCATGGGAGCCAAAG
species | Zea mays |
transcript | GRMZM2G175867_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGACCTGGATGTTGACCATGTCATCATGTTTGACTTCCCATCGAATTCT ATTGATTACCTTCACAGAACCGGGAGAACTGCACGCATGGGAGCCCAAGEST: gi|148986358|gb|EE030095.2|EE030095
genomic: TGGACCTGGATGTTGACCATGTCATCATGTTTGACTTCCCATCGAATTCTgtatgtgttt ... gtgtttttagATTGATTACCTTCACAGAACCGGGAGAACTGCACGCATGGGAGCCAAAG
EST: -GACCCTGGATGTGGACCATGTCATCATGTTTGACTTCCCATCGAATTCT ATTGATTACCTTCACAGAACCGGGAGAACTGCACGCATGGGAGCCAAAGEST: gi|33942668|gb|CF349268.1|CF349268
genomic: GGA-CCTGGATGTTGACCATGTCATCATGTTTGACTTCCCATCGAATTCTgtatgtgttt ... gtgtttttagATTGATTACCTTCACAGAACCGGGAGAACTGCACGCATGGGAGCCAAAG
EST: TGGACCTGGATGTTGACCATGTCATCATGTTTGACTTCCCATCGAATTCT ATTGATTACCTTCACAGAACCGGGAGAACTGCACGCATGGGAGCCCAAGEST: gi|6827364|gb|AW331007.1|AW331007
genomic: TGGACCTGGATGTTGACCATGTCATCATGTTTGACTTCCCATCGAATTCTgtatgtgttt ... gtgtttttagATTGATTACCTTCACAGAACCGGGAGAACTGCACGCATGGGAGCCAAAG
EST: TGGACCTGGATGTTGACCATGTCATCATGTTTGACTTCCCATCGAATTCT ATTGATTACCTTCACAGAACCGGGAGAACTGCACGCATGGGAGCCAAAGEST: gi|78123116|gb|DV541500.1|DV541500
genomic: TGGACCTGGATGTTGACCATGTCATCATGTTTGACTTCCCATCGAATTCTgtatgtgttt ... gtgtttttagATTGATTACCTTCACAGAACCGGGAGAACTGCACGCATGGGAGCCAAAG
EST: TGGACCTGGATGTTGACCATGTCATCATGTTTGACTCCCCATCGAATTCT ATTGATTACCTTCACAGAACCGGGAGAACTGCACGCATGGGAGCCAAAG
genomic: TGGACCTGGATGTTGACCATGTCATCATGTTTGACTTCCCATCGAATTCTgtatgtgttt ... gtgtttttagATTGATTACCTTCACAGAACCGGGAGAACTGCACGCATGGGAGCCAAAG
tactcccatcatagcgatttttatgcagtctttgtggtaattcttgtgtttttagATTGATTACCTTCACAGAACCGGGAGAACTGCACGCATGGGAGCCAAAG
ttcttgt CT-rich tract
atttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgtttgtgtttgcatttactcccatcatagcgatttttatgcagtctttgtggtaattcttgtgtttttagATTGATTACCTTCACAGAACCGGGAGAACTGCACGCATGGGAGCCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA