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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcagtcaactgtagtatgaaaagaaagagatcgagccgcattacatatgtgcccctttttgaaactctggacagTACCATGGTGGAACAAACTTCGGAAGGACATCTGCTGCCTTTGTGATGCCAAAATACTACGACGAGGCACCTCTCGACGAATTCG

Basic information

species Zea mays
transcript GRMZM2G175779_T02
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74240255|gb|DT648169.1|DT648169
EST:     CCGTGGCGCGCTTCTTCTCCGTGGGCGGAACCTTGGCAAACTATTACATG                         TACCCTGGTGGAACAAACTTCGGAAGGACATCTGC
genomic: CCGTGGCGCGCTTCTTCTCCGTGGGCGGAACCTTGGCAAACTATTACATGgtactcagtc ... ctctggacagTACCATGGTGGAACAAACTTCGGAAGGACATCTGC
EST: gi|71307605|gb|DR790023.1|DR790023
EST:     CCGTGGCGCGCTTCTTCTCCGTGGGCGGAACCTTGGCAAACTATTACATG                         TACCATGGTGGAACAAACTTCGGAAGGACATCTGCTGCCTTTGTGATGCCA
genomic: CCGTGGCGCGCTTCTTCTCCGTGGGCGGAACCTTGGCAAACTATTACATGgtactcagtc ... ctctggacagTACCATGGTGGAACAAACTTCGGAAGGACATCTGCTGCCTTTGTGATGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagaaagagatcgagccgcattacatatgtgcccctttttgaaactctggacagTACCATGGTGGAACAAACTTCGGAAGGACATCTGCTGCCTTTGTGATGCCAAAATACTACGACGAGGCACCTCTCGACGAATTCG
                    attacatat  TA-rich tract