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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaatgctttgttaagcactgatttgattgcatcttgtgtaatttaatatactgataatacttagtgtttcctttgaagGTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTG

Basic information

species Zea mays
transcript GRMZM2G174990_T02
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211480222|gb|FK977827.1|FK977827
EST:     CAATAAAATCATTCCTCGATCCAAAAACTGCTTCCAAGATCCAT                         GTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTG
genomic: CAATAAAATCATTCCTCGATCCAAAAACTGCTTCCAAGATCCATgtatgtaatg ... tcctttgaagGTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTG
EST: gi|31353713|gb|CD438070.1|CD438070
EST:     GGAGCACAATAAAATCATTCCTCGATCCAAAAACTGCTTCCAAGATCCAT                         GTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTG
genomic: GGAGCACAATAAAATCATTCCTCGATCCAAAAACTGCTTCCAAGATCCATgtatgtaatg ... tcctttgaagGTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTG
EST: gi|211480218|gb|FK977823.1|FK977823
EST:     CAATAAAATCATTCCTCGATCCAAAAACTGCTTCCAAGATCCAT                         GTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTG
genomic: CAATAAAATCATTCCTCGATCCAAAAACTGCTTCCAAGATCCATgtatgtaatg ... tcctttgaagGTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTG
EST: gi|211485991|gb|FK977851.1|FK977851
EST:     CAATAAAATCATTCCTCGATCCAAAAACTGCTTCCAAGATCCAT                         GTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTG
genomic: CAATAAAATCATTCCTCGATCCAAAAACTGCTTCCAAGATCCATgtatgtaatg ... tcctttgaagGTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTG
EST: gi|60351666|gb|DN218639.1|DN218639
EST:     GGAGCACAATAAAATCATTCCTCGATCCAAAAACTGCTTCCAAGATCCAT                         GTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAA
genomic: GGAGCACAATAAAATCATTCCTCGATCCAAAAACTGCTTCCAAGATCCATgtatgtaatg ... tcctttgaagGTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattgcatcttgtgtaatttaatatactgataatacttagtgtttcctttgaagGTTCTTGGGAATAAGTATCAACATAAGTTGCTCGAAATAATTGACGAGTG
                         tactgat  putative branch site (score: 2)
                                         tgtttccttt  putative PPT
             tgtaatttaatatact  TA-rich tract