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gtgaaagcataagtgctgtatttgttaaccgctgcataaacgttttcttaagttgttccagctggatgcttactatatttttacatgttcaaagGTGGGGTGGTGGAAAGGATGACAAATATTTTGCGAGGCTTGGGAAGAATATAATATCTGTATACGAAACAGATACATTCTCCCTTCTTGATAAGAAGTCT
species | Zea mays |
transcript | GRMZM2G174757_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACTACTGGCGGGAATATTGGGGTTTCTGGTGTTTCATGGCCTATTTTCAG GTGGGGTGGTGGAAAGGATGACAAATATTTTGCGAGGCTTGGGAAGAATATEST: gi|211218557|gb|FL110192.1|FL110192
genomic: ACTACTGGCGGGAATATTGGGGTTTCTGGTGTTTCATGGCCTATTTTCAGgtgaaagcat ... atgttcaaagGTGGGGTGGTGGAAAGGATGACAAATATTTTGCGAGGCTTGGGAAGAATAT
EST: ACTACTGGCGGGAATATTGGGGTTTCTGGTGTTTCATGGCCTATTTTCAG GTGGGGTGGTGGAAAGGATGACAAATATTTTGCGAGGCTTGGGAAGAATATEST: gi|22546320|gb|BU098631.1|BU098631
genomic: ACTACTGGCGGGAATATTGGGGTTTCTGGTGTTTCATGGCCTATTTTCAGgtgaaagcat ... atgttcaaagGTGGGGTGGTGGAAAGGATGACAAATATTTTGCGAGGCTTGGGAAGAATAT
EST: CTACTGGCGGGAATATTGGGGGGTTCTGGTGTTTCATGGCCTATTTTCAG GTGGGGTGGTGGAAAGGATGACAAATATTTTGCGAGGCTTGGGAAGAATATEST: gi|22521176|gb|BU079987.1|BU079987
genomic: CTACTGGCGGGAATATT-GGGGTTTCTGGTGTTTCATGGCCTATTTTCAGgtgaaagcat ... atgttcaaagGTGGGGTGGTGGAAAGGATGACAAATATTTTGCGAGGCTTGGGAAGAATAT
EST: ACTACTGGCGGGAATATTGGGGTTTCTGGTGTTTCATGGCCTATTTTCAG GTGGGGTGGTGGAAAGGATGACAAATATTTTGCGAGGCTTGGGAAGAATATEST: gi|22472476|gb|BU036956.1|BU036956
genomic: ACTACTGGCGGGAATATTGGGGTTTCTGGTGTTTCATGGCCTATTTTCAGgtgaaagcat ... atgttcaaagGTGGGGTGGTGGAAAGGATGACAAATATTTTGCGAGGCTTGGGAAGAATAT
EST: ACTACTGGCGGGAATATTGGGGTTTCTGGTGTTTCATGGCCTATTTTCAG GTGGGGTGGTGGAAAGGATGACAAATATTTTGCGAGGCTTGGGAAGAATATEST: gi|32841675|gb|CD981356.1|CD981356
genomic: ACTACTGGCGGGAATATTGGGGTTTCTGGTGTTTCATGGCCTATTTTCAGgtgaaagcat ... atgttcaaagGTGGGGTGGTGGAAAGGATGACAAATATTTTGCGAGGCTTGGGAAGAATAT
EST: ACTACTGGCGGGAATATTGGGGTTTCTGGTGTTTCATGGCCTATTTTCAG GTGGGGTGGTGGAAAGGATGACAAATATTTTGCGAGGCTTGGGAAGAATATEST: gi|32841369|gb|CD981050.1|CD981050
genomic: ACTACTGGCGGGAATATTGGGGTTTCTGGTGTTTCATGGCCTATTTTCAGgtgaaagcat ... atgttcaaagGTGGGGTGGTGGAAAGGATGACAAATATTTTGCGAGGCTTGGGAAGAATAT
EST: ACTACTGGCGGGAATATTGGGGTTTCTGGTGTTTCATGGCCTATTTTCAG GTGGGGTGGTGGAA-GGATGA-AAATATTTTGCGAGGCTTGGGAAGAATATEST: gi|60350764|gb|DN217737.1|DN217737
genomic: ACTACTGGCGGGAATATTGGGGTTTCTGGTGTTTCATGGCCTATTTTCAGgtgaaagcat ... atgttcaaagGTGGGGTGGTGGAAAGGATGACAAATATTTTGCGAGGCTTGGGAAGAATAT
EST: ACTACTGGCGGGAATATTGGGGTTTCTGGTGTTTCATGGCCTATTTTCAG GTGGGGTGGTGGAAAGGATGACEST: gi|32841679|gb|CD981360.1|CD981360
genomic: ACTACTGGCGGGAATATTGGGGTTTCTGGTGTTTCATGGCCTATTTTCAGgtgaaagcat ... atgttcaaagGTGGGGTGGTGGAAAGGATGAC
EST: ACTACTGGCGGGAATATTGGGGTTTCTGGTGTTTCATGGCCTATTTTCAG GTGGGGTGGTGGAAAGGATGACAAATATTTTGCGAGGCTTGNGAAGAATAT
genomic: ACTACTGGCGGGAATATTGGGGTTTCTGGTGTTTCATGGCCTATTTTCAGgtgaaagcat ... atgttcaaagGTGGGGTGGTGGAAAGGATGACAAATATTTTGCGAGGCTTGGGAAGAATAT
acgttttcttaagttgttccagctggatgcttactatatttttacatgttcaaagGTGGGGTGGTGGAAAGGATGACAAATATTTTGCGAGGCTTGGGAAGAATATAATATCTGTATACGAAACAGATACATTCTCCCTTCTTGATAAGAAGTCT
tgcttac putative branch site (score: 204)
ttactatatttttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaagcataagtgctgtatttgttaaccgctgcataaacgttttcttaagttgttccagctggatgcttactatatttttacatgttcaaagGTGGGGTGGTGGAAAGGATGACAAATATTTTGCGAGGCTTGGGAAGAATATAATATCTGTATACGAAACAGATACATTCTCCCTTCTTGATAAGAAGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT