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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatggataagtctgggatctccttttctgcttgtgtatgagggtaattcaacattacagtggttacggtatttggctctaaaacaaggttcatgctgtagGATCTTGCAACGGTGGTCCCGACACTCGAACCGTCGGGAATCGATCTCCTATCT

Basic information

species Zea mays
transcript GRMZM2G174596_T02
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4730272|gb|AI649438.1|AI649438
EST:     TTGCTTCGTTGCCTGATTACAAGTCAACTTTCCCAAAGTGGCCACCTGTG                         GATCTTGCAACGGTGGTCCCGACACTCGAACCGTCGGGAATCGATCTCCTA
genomic: TTGCTTCGTTGCCTGATTACAAGTCAACTTTCCCAAAGTGGCCACCTGTGgtaagcaata ... catgctgtagGATCTTGCAACGGTGGTCCCGACACTCGAACCGTCGGGAATCGATCTCCTA
EST: gi|50329879|gb|CO525005.1|CO525005
EST:     TTGCTTCGTTGCCTGATTACAAGTCAACTTTCCCAAAGTGGCCACCTGTG                         GATCTTGCAACGGTGGTCCCGACACTCGAACCGTCGGGAATCGATCTCCTA
genomic: TTGCTTCGTTGCCTGATTACAAGTCAACTTTCCCAAAGTGGCCACCTGTGgtaagcaata ... catgctgtagGATCTTGCAACGGTGGTCCCGACACTCGAACCGTCGGGAATCGATCTCCTA
EST: gi|50324561|gb|CO519687.1|CO519687
EST:     TTGCTTCGTTGCCTGATTACAAGTCAACTTTCCCAAAGTGGCCACCTGTG                         GATCTTGCAACGGTGGTCCCGACACTCGAACCGTCGGGAATCGATCTCCTA
genomic: TTGCTTCGTTGCCTGATTACAAGTCAACTTTCCCAAAGTGGCCACCTGTGgtaagcaata ... catgctgtagGATCTTGCAACGGTGGTCCCGACACTCGAACCGTCGGGAATCGATCTCCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcaacattacagtggttacggtatttggctctaaaacaaggttcatgctgtagGATCTTGCAACGGTGGTCCCGACACTCGAACCGTCGGGAATCGATCTCCTATCT
                              ctctaaa  putative branch site (score: 3)
                                 taaaacaa  TA-rich tract