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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaacaattacacacttccacgttttttagaaaaaaaggaaaatggacaatgaagactaacatcactttatcattcacagGATTGAATCTGAAAAGATAAACATAGAATTGCCCAGTCTTGACAAACAAGAAATTACACCTCCAAGTTTTCCACAACGAGAACATCACAACCTTAAATAC

Basic information

species Zea mays
transcript GRMZM2G174114_T01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60341388|gb|DN208361.1|DN208361
EST:     CATTGGTACTTCAACCCATCAATTGAAGAAGCTGAAGCTTTTTATAGCAG                         GATTGAATCTGAAAAGATAAACAT
genomic: CATTGGTACTTCAACCCATCAATTGAAGAAGCTGAAGCTTTTTATAGCAGgtacaacaat ... tcattcacagGATTGAATCTGAAAAGATAAACAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttagaaaaaaaggaaaatggacaatgaagactaacatcactttatcattcacagGATTGAATCTGAAAAGATAAACATAGAATTGCCCAGTCTTGACAAACAAGAAATTACACCTCCAAGTTTTCCACAACGAGAACATCACAACCTTAAATAC
                             gactaac  putative branch site (score: 1)
                                        ctttatc  putative PPT
     aaaaaaaggaaaat  TA-rich tract