1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...caaaatttggcaatagcgtagtggcaaattgtggtgtaaccgtcaagcagcaaagtaaccactcattgatgtagtaacccaacatctttctttgtcacagGCACTATCTAAGGCTTTAAGGGAGGATGAACTGTTGTATCTTAGATTGCAGTTTAAGCTGCTCGAGCCCAGAGACGGGCTCGTATCGCTCGACAACTTTC
species | Zea mays |
transcript | GRMZM2G173928_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TAGTTAAGCAATATCTTCGTGCTACTCCTCTTAAACGTTTGGCATTAAAG GCACTATCTAAGGCTTTAAGGGAGGATGAACTGTTGTATCTTAGATTGCAGEST: gi|37383606|gb|CF628823.1|CF628823
genomic: TAGTTAAGCAATATCTTCGTGCTACTCCTCTTAAACGTTTGGCATTAAAGgtacagtacg ... tttgtcacagGCACTATCTAAGGCTTTAAGGGAGGATGAACTGTTGTATCTTAGATTGCAG
EST: TAGTTAAGCAATATCTTCGTGCTACTCCTCTTAAACGTTTGGCATTAAAG GCACTATCTAAGGCTTAAAGGGAGGATGAACTGTTGTATCTTAGATTGCAGEST: gi|116818527|gb|EC861555.1|EC861555
genomic: TAGTTAAGCAATATCTTCGTGCTACTCCTCTTAAACGTTTGGCATTAAAGgtacagtacg ... tttgtcacagGCACTATCTAAGGCTTTAAGGGAGGATGAACTGTTGTATCTTAGATTGCAG
EST: TAGTTAAGCAATATCTTCGTGCTACTCCTCTTAAACGTTTGGCATTAAAG GCACTATCTAAGGCTTTAAGGGAGGATGAACTGTTGTATCTTA
genomic: TAGTTAAGCAATATCTTCGTGCTACTCCTCTTAAACGTTTGGCATTAAAGgtacagtacg ... tttgtcacagGCACTATCTAAGGCTTTAAGGGAGGATGAACTGTTGTATCTTA
agcagcaaagtaaccactcattgatgtagtaacccaacatctttctttgtcacagGCACTATCTAAGGCTTTAAGGGAGGATGAACTGTTGTATCTTAGATTGCAGTTTAAGCTGCTCGAGCCCAGAGACGGGCTCGTATCGCTCGACAACTTTC
tagtaac putative branch site (score: 37)
catctttctttgtc putative PPT
aaagtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaaatttggcaatagcgtagtggcaaattgtggtgtaaccgtcaagcagcaaagtaaccactcattgatgtagtaacccaacatctttctttgtcacagGCACTATCTAAGGCTTTAAGGGAGGATGAACTGTTGTATCTTAGATTGCAGTTTAAGCTGCTCGAGCCCAGAGACGGGCTCGTATCGCTCGACAACTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - -tgtggtg
- - - - - - - - - - - - - - - - - - - - - - - gcagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacccaa