Sequence
atgc intronic sequence ATGC exonic sequence...atatcaatatttttttatttttttctgtgatgcttaaattttaagttgattgatcaacatgaactattgctaatgacgttagttttttccctggttgtagGATGCAGGAATTGGCACAAGCATTGATTCATTCTATGAATATCTTCTAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G173868_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os01g56670.3 (Oryza sativa), 3'ss of exon 8
atatcaatatttttttatttttttctgtgatgcttaaattttaagttgattgatcaac-atgaactattgctaatgacgttagttttttccctggttgtagGATGCAGGAATTGGCACAAGCATTGATTCATTCTATGAATATCTTCTAAAG
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agcaaaatgtgctttcaaatttta-tgcgatgtttagtttatgagattattgatcaattatcatcatgaagtattttcagtggaattatccctaattgcagGATGCAGGAATTGGCACAAGCATTGACTCATTCTATGAGTATCTTCTAAAG
upper sequence: GRMZM2G173868_T02 (Zea mays), 3'ss of exon 8
lower sequence: PP1S313_34V6.1 (Physcomitrella patens), 3'ss of exon 8
atatcaatattttt-ttatttttttctgtgat-gcttaaattttaagtt-gattgatcaacatgaactattgctaatgacgttagttttttccctg-gttgtagGATGCAGGAATTGGCACAAGCATTGATTCATTCTATGAATATCTTCTAAAG
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---ttaggattgaagctagtgattcatgtgtttgctctgctgtttagcaagaacactgcagatgctaaattgc-aatattactcatgcggggtatgtgctatagGATGCAGGCATTGGTACCAGCATTGATTCGTTCTATGAGTACCTACTCAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76281155|gb|DV020723.1|DV020723EST: ATCTTGTTGGTGCCCATATAAATGTCTTTACTGGTGAATGGACACAGAAG GATGCAGGAATTGGCACAAGCATTGATTCATTCTATGAATATCTTCTAAAG
genomic: ATCTTGTTGGTGCCCATATAAATGTCTTTACTGGTGAATGGACACAGAAGgtttggtttt ... ctggttgtagGATGCAGGAATTGGCACAAGCATTGATTCATTCTATGAATATCTTCTAAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgattgatcaacatgaactattgctaatgacgttagttttttccctggttgtagGATGCAGGAATTGGCACAAGCATTGATTCATTCTATGAATATCTTCTAAAG
tgctaat putative branch site (score: 2)
ttagttttttccct putative PPT
ttagtttttt TA-rich tract