1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtttcataaccacattggcttgttatattatgttgctgttaggctgatcatcatttactttattatctttgtacagGCCATGACCGAGACCGAGGCACTGGACATGAAAGCCGCGTTGGAATCCAGAGGGGAAGTCGAGTTCAAGGTGTGTACCCTTGGGAAGAATGTCACCATAA
species | Zea mays |
transcript | GRMZM2G171688_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGGTCTTGCATTCAAAGGGAACCAGAAGTTGGTTGTTGAGTCATTGGAA GCCATGACCGAGACCGAGGCACTGGACATGAAAGCCGCGTTGGAATCCAGAEST: gi|20301525|gb|BQ164468.1|BQ164468
genomic: TTGGTCTTGCATTCAAAGGGAACCAGAAGTTGGTTGTTGAGTCATTGGAAgtaagtttca ... ctttgtacagGCCATGACCGAGACCGAGGCACTGGACATGAAAGCCGCGTTGGAATCCAGA
EST: TTGGTCTTGCATTCAAAGGGAACCAGAAGTTGGTTGTTGAGTCATTGGAA GCCATGACCGAGACCGAGGCACTGGACATGAAAGCCGCGEST: gi|211259613|gb|FL189918.1|FL189918
genomic: TTGGTCTTGCATTCAAAGGGAACCAGAAGTTGGTTGTTGAGTCATTGGAAgtaagtttca ... ctttgtacagGCCATGACCGAGACCGAGGCACTGGACATGAAAGCCGCG
EST: TTGGTCTTGCATTCAAAGGGAACCAGAAGTTGGTTGTTGAGTCATTGGAA GCCATGACCGAGACCGAGGCACTGGACATGAAAGCCGCGTTGGAATCCAGGEST: gi|5268787|gb|AI770751.1|AI770751
genomic: TTGGTCTTGCATTCAAAGGGAACCAGAAGTTGGTTGTTGAGTCATTGGAAgtaagtttca ... ctttgtacagGCCATGACCGAGACCGAGGCACTGGACATGAAAGCCGCGTTGGAATCCAGA
EST: TTGGTCTTGCATTCAAAGGGAACCAGAAGTTGGTTGTTGAGTCATTGGAA GCCATGACCGAGACCGAGGCACTGGACATGAAAGCCGCGTTGGAATCCAGAEST: gi|26558249|gb|CA830484.1|CA830484
genomic: TTGGTCTTGCATTCAAAGGGAACCAGAAGTTGGTTGTTGAGTCATTGGAAgtaagtttca ... ctttgtacagGCCATGACCGAGACCGAGGCACTGGACATGAAAGCCGCGTTGGAATCCAGA
EST: TTGGTCTTGCATTCAAAGGGAACCAGAAGTTGGTTGTTGAGTCATTGGAA GCCATGACCGAGACCGAGGCACTGGACATGAAAGCCGCGTTGGAATCCAGAEST: gi|5928612|gb|AW056009.1|AW056009
genomic: TTGGTCTTGCATTCAAAGGGAACCAGAAGTTGGTTGTTGAGTCATTGGAAgtaagtttca ... ctttgtacagGCCATGACCGAGACCGAGGCACTGGACATGAAAGCCGCGTTGGAATCCAGA
EST: TTGGTCTTGCATTCAAAGGGAACCAGAAGTTGGTTGTTGAGTCATTGGAA GCCATGACCGAGACCGAGGCACTGGACATGAAAGCCGCGTTGGAATCCAGAEST: gi|5555434|gb|AI881385.1|AI881385
genomic: TTGGTCTTGCATTCAAAGGGAACCAGAAGTTGGTTGTTGAGTCATTGGAAgtaagtttca ... ctttgtacagGCCATGACCGAGACCGAGGCACTGGACATGAAAGCCGCGTTGGAATCCAGA
EST: TTGGTCTTGCATTCAAAGGGAACCAGAAGTTGGTTGTTGAGTCATTGGAA GCCATGACCGAGACCGAGGCACTGGACATGAAAGCCEST: gi|21987499|gb|BQ779027.1|BQ779027
genomic: TTGGTCTTGCATTCAAAGGGAACCAGAAGTTGGTTGTTGAGTCATTGGAAgtaagtttca ... ctttgtacagGCCATGACCGAGACCGAGGCACTGGACATGAAAGCC
EST: TTGGTCTTGCATTCAAAGGGAACCAGAAGTTGGTTGTTGAGTCATTGGAA GCCATGACCGAGACCGAGGCACTGGACATGAAAGCCGCGTTGGAATCCAGAEST: gi|211325873|gb|FL057941.1|FL057941
genomic: TTGGTCTTGCATTCAAAGGGAACCAGAAGTTGGTTGTTGAGTCATTGGAAgtaagtttca ... ctttgtacagGCCATGACCGAGACCGAGGCACTGGACATGAAAGCCGCGTTGGAATCCAGA
EST: TTGGTCTTGCATTCAAAGGGAACCAGAAGTTGGTTGTTGAGTCATTGGAA GCCATGACCGAGACCGAGGCACTGGACATGAAAGCCGCGTTGGAATCCAGAEST: gi|213173866|gb|FM192224.1|FM192224
genomic: TTGGTCTTGCATTCAAAGGGAACCAGAAGTTGGTTGTTGAGTCATTGGAAgtaagtttca ... ctttgtacagGCCATGACCGAGACCGAGGCACTGGACATGAAAGCCGCGTTGGAATCCAGA
EST: TTGGTCTTGCATTCAAAGGGAACCAGAAGTTGGTTGTTGAGTCATTGGAA GCCATGACCGAGACCGAGGCACTGGACATGAAAGCCGCGTTGGAATCCAGGEST: gi|31354132|gb|CD438489.1|CD438489
genomic: TTGGTCTTGCATTCAAAGGGAACCAGAAGTTGGTTGTTGAGTCATTGGAAgtaagtttca ... ctttgtacagGCCATGACCGAGACCGAGGCACTGGACATGAAAGCCGCGTTGGAATCCAGA
EST: TTGGTCTTGCATTCAAAGGGAACCAGAAGTTGGTTGTTGAGTCATTGGAA GCCATGACCGAGACCGAGGCACTGGACATGAAAGCCGCGTTGGAATCCAGA
genomic: TTGGTCTTGCATTCAAAGGGAACCAGAAGTTGGTTGTTGAGTCATTGGAAgtaagtttca ... ctttgtacagGCCATGACCGAGACCGAGGCACTGGACATGAAAGCCGCGTTGGAATCCAGA
gttatattatgttgctgttaggctgatcatcatttactttattatctttgtacagGCCATGACCGAGACCGAGGCACTGGACATGAAAGCCGCGTTGGAATCCAGAGGGGAAGTCGAGTTCAAGGTGTGTACCCTTGGGAAGAATGTCACCATAA
ggctgat putative branch site (score: 148)
ttatcttt putative PPT
atcatttactttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttcataaccacattggcttgttatattatgttgctgttaggctgatcatcatttactttattatctttgtacagGCCATGACCGAGACCGAGGCACTGGACATGAAAGCCGCGTTGGAATCCAGAGGGGAAGTCGAGTTCAAGGTGTGTACCCTTGGGAAGAATGTCACCATAA
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