Sequence
atgc intronic sequence ATGC exonic sequence...tctaaactagattggctacttctgagtctgcatgtttcacttaattcattctcctgtttttgctaacaactaaactaatggtagtgtcatctcgttgcagCGCATCTTGAACGTTCAGTACGCCATTCCAGACTACGTGAACATATCTCCAGAGTGCAGGCATCTAATTTCGAGGATTTTTGTTGGTGATCCTGCTATGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G171435_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os03g55600.1 (Oryza sativa), 3'ss of exon 7
-----------tctaaactagattggctacttctgagtctgcat-gtttcacttaattcattctcctgtttttgctaacaactaaactaatggtagtgtcatctcgttgcagCGCATCTTGAACGTTCAGTACGCCATTCCAGACTACGTGAACATATCTCCAGAGTGCAGGCATCTAATTTCGAGGATTTTTGTTGGTGATCCTGCTATGG
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gttatataatttcttttcttattt--ctcttgctttgtttacattggagcacttttttcatccttggctctctgtgaa-----aagctgatgtcagtgtcatttttgtgcagCGTATCTTGAATGTTCAGTACTCAATTCCAGAAAACGTGGACATATCTCCAGAATGTAGGCATCTAATTTCGAGGATTTTTGTCGGGGATCCGTCTTTG-
upper sequence: GRMZM2G171435_T02 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA07G33120.1 (Glycine max), 3'ss of exon 7
tctaaactagattggctacttctgagtctgcatgtttcacttaattcattctcctgtttttgctaacaactaaactaatggtagtgtcatctcgttgcagCGCATCTTGAACGTTCAGTACGCCATTCCAGACTACGTGAACATATCTCCAGAGTGCAGGCATCTAATTTCGAGGATTTTTGTTGGTGATCCTGCTATGG
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--gtaactaatgacactttttttcaaccaatgtggtacttttgattgaatta---gttttc--------ctaaattgatg--aatgttg----gttgcagAGGATTTTGAATGTTCAGTACTCAATTCCTGACTACGTTCACATATCTTCCGAGTGCCGTCATCTGATATCAAGGATTTTTGTCGCTGATCCTGCAAGG-
upper sequence: GRMZM2G171435_T02 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA02G15330.1 (Glycine max), 3'ss of exon 7
tctaaactagattggctacttctgagtctgcatgtttcacttaattcattctcctgtttttgct-aacaactaaactaatggtagtgtcatctcgttgcagCGCATCTTGAACGTTCAGTACGCCATTCCAGACTACGTGAACATATCTCCAGAGTGCAGGCATCTAATTTCGAGGATTTTTGTTGGTGATCCTGCTATGG
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-----------------gtaactaa--ttgcacctttttttcaat-cagtgtgttactttgattgaattagttttcctaaactgatgcatgcttgttgcagAGGATTTTGAATGTTCAGTACTCAATTCCTGACTATGTTCATATATCTTCCGAGTGCCGTCATCTGATATCAAGGATTTTTGTTGCTGATCCTGCAAAG-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60353530|gb|DN220503.1|DN220503EST: ATCCTTTTGAAGACCCAGAAGAGCCTAAGAACTTCCGCAAGACAATTCAG CGCATCTTGAACGTTCAGTACGCCATTCCAGACTACGTGAACATATCTCCA
genomic: ATCCTTTTGAAGACCCAGAAGAGCCTAAGAACTTCCGCAAGACAATTCAGgttatttttt ... ctcgttgcagCGCATCTTGAACGTTCAGTACGCCATTCCAGACTACGTGAACATATCTCCA
EST:
gi|78107855|gb|DV526273.1|DV526273EST: ATCCTTTTGAAGACCCAGAAGAGCCTAAGAACTTCCGCAAGACAATTCAG CGCATCTTGAACGTTCAGTACGCCATTCCAGACTACGTGAACATATCTCCA
genomic: ATCCTTTTGAAGACCCAGAAGAGCCTAAGAACTTCCGCAAGACAATTCAGgttatttttt ... ctcgttgcagCGCATCTTGAACGTTCAGTACGCCATTCCAGACTACGTGAACATATCTCCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcattctcctgtttttgctaacaactaaactaatggtagtgtcatctcgttgcagCGCATCTTGAACGTTCAGTACGCCATTCCAGACTACGTGAACATATCTCCAGAGTGCAGGCATCTAATTTCGAGGATTTTTGTTGGTGATCCTGCTATGG
tcatctc CT-rich tract
taaactaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tctaaactagattggctacttctgagtctgcatgtttcacttaattcattctcctgtttttgctaacaactaaactaatggtagtgtcatctcgttgcagCGCATCTTGAACGTTCAGTACGCCATTCCAGACTACGTGAACATATCTCCAGAGTGCAGGCATCTAATTTCGAGGATTTTTGTTGGTGATCCTGCTATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - -ggctact
- - - - - - - - - - - - - - tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caactaa