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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcgagtctagcttgtctcttgtccaactgaaacgaaaccgactcttgctcaaaatctagaccatgcatggtgctgtgtgtgctgcgcagGTGTTGAACGAGGACCTACGGCTCGTTCTTGGCCAGCAAGAGGGGATGATCGACGGCGCCAACGTCTGGAACTGGCCGGTGTCGTACGACAAACTCGGGA

Basic information

species Zea mays
transcript GRMZM2G171390_T03
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G171390_T04 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os10g41760.1 (Oryza sativa), 3'ss of exon 8
----------------------------------------------------gcgagtctagcttgtctcttgtccaactgaaacgaaaccgactcttgctcaaaatc-----tagaccatgcatggtg---ctgtgtg-tgctgcgcagGTGTTGAACGAGGACCTACGGCTCGTTCTTGGCCAGCAAGAGGGGATGATCGACGGCGCCAACGTCTGGAACTGGCCGGTGTCGTACGACAAACTCGGGA
                                                       |   |||||||   |||     | | ||       |  || || | ||   ||     ||   |||  |||||     ||| || |  |  |||||| ||||| |||||||||||||| || ||||| ||||||||| |||||||  | ||||| ||||| ||||||||||| ||||| || ||||| || || |
gcaagtctcaaaattttcagagcaacttggtagtcactgatctccatgtcatctcatgttagcttgcaacttactacagtaaagttttttccgctgtttcacaccgtcgtctataagacatcaatggtaatcttgtatgatcttctgcagGTCTTGAATGAGGACCTACGGCTTGTGCTTGGGCAGCAAGAGCGGATGATAAATGGCGCGAACGTATGGAACTGGCCAGTGTCATATGACAAGCTTGGTA

upper sequence: GRMZM2G171390_T04 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os10g41780.1 (Oryza sativa), 3'ss of exon 8
----------------------------------------------------gcgagtctagcttgtctcttgtccaactgaaacgaaaccgac-tcttgctcaaaatc-----tagaccatgcatggtg---ctgtgtgtgctg--cgcagGTGTTGAACGAGGACCTACGGCTCGTTCTTGGCCAGCAAGAGGGGATGATCGACGGCGCCAACGTCTGGAACTGGCCGGTGTCGTACGACAAACTCGGGA
                                                    |  | |  || |||   ||      | |     |  |||    | ||||  |   ||     || | |||  ||  |     ||| ||  ||    |||||| ||||| ||||| || || ||||| || || ||||||||  |||||||| | ||||| || |||||||||||||| || || || ||||| || || |
gtgagtccgaaaaattcagagcaacttcatactaaactgttgtccatctcatgtcattacagtttgcacctgactatagtatgcggttacctttgttttgcatactgtcctctatacaacatctataataatcttgtatgatctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATCAATGGCGCAAATGTCTGGAACTGGCCAGTATCATATGACAAGCTTGGTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71445817|gb|DR826867.1|DR826867
EST:     TCAAGCACGTGCCGCTCATGCACCTGCTGTGGTCGCATTTCGCAGAGAAG                         GTGTTGAACGAGGACCTACGGCTCGTTCTTGGCCAGCAAGAGGGGATGATC
genomic: TCAAGCACGTGCCGCTCATGCACCTGCTGTGGTCGCATTTCGCAGAGAAGgcgagtctag ... tgctgcgcagGTGTTGAACGAGGACCTACGGCTCGTTCTTGGCCAGCAAGAGGGGATGATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaccgactcttgctcaaaatctagaccatgcatggtgctgtgtgtgctgcgcagGTGTTGAACGAGGACCTACGGCTCGTTCTTGGCCAGCAAGAGGGGATGATCGACGGCGCCAACGTCTGGAACTGGCCGGTGTCGTACGACAAACTCGGGA
                aaaatcta  TA-rich tract