Sequence
atgc intronic sequence ATGC exonic sequencegcgagtctagcttgtctcttgtccaactgaaacgaaaccgactcttgctcaaaatctagaccatgcatggtgctgtgtgtgctgcgcagGTGTTGAACGAGGACCTACGGCTCGTTCTTGGCCAGCAAGAGGGGATGATCGACGGCGCCAACGTCTGGAACTGGCCGGTGTCGTACGACAAACTCGGGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G171390_T04 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os10g41760.1 (Oryza sativa), 3'ss of exon 8
----------------------------------------------------gcgagtctagcttgtctcttgtccaactgaaacgaaaccgactcttgctcaaaatc-----tagaccatgcatggtg---ctgtgtg-tgctgcgcagGTGTTGAACGAGGACCTACGGCTCGTTCTTGGCCAGCAAGAGGGGATGATCGACGGCGCCAACGTCTGGAACTGGCCGGTGTCGTACGACAAACTCGGGA
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gcaagtctcaaaattttcagagcaacttggtagtcactgatctccatgtcatctcatgttagcttgcaacttactacagtaaagttttttccgctgtttcacaccgtcgtctataagacatcaatggtaatcttgtatgatcttctgcagGTCTTGAATGAGGACCTACGGCTTGTGCTTGGGCAGCAAGAGCGGATGATAAATGGCGCGAACGTATGGAACTGGCCAGTGTCATATGACAAGCTTGGTA
upper sequence: GRMZM2G171390_T04 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os10g41780.1 (Oryza sativa), 3'ss of exon 8
----------------------------------------------------gcgagtctagcttgtctcttgtccaactgaaacgaaaccgac-tcttgctcaaaatc-----tagaccatgcatggtg---ctgtgtgtgctg--cgcagGTGTTGAACGAGGACCTACGGCTCGTTCTTGGCCAGCAAGAGGGGATGATCGACGGCGCCAACGTCTGGAACTGGCCGGTGTCGTACGACAAACTCGGGA
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gtgagtccgaaaaattcagagcaacttcatactaaactgttgtccatctcatgtcattacagtttgcacctgactatagtatgcggttacctttgttttgcatactgtcctctatacaacatctataataatcttgtatgatctttctgcagGTCTTGAATGAGGATCTTCGACTCGTGCTCGGGCAGCAAGAACGGATGATCAATGGCGCAAATGTCTGGAACTGGCCAGTATCATATGACAAGCTTGGTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71445817|gb|DR826867.1|DR826867EST: TCAAGCACGTGCCGCTCATGCACCTGCTGTGGTCGCATTTCGCAGAGAAG GTGTTGAACGAGGACCTACGGCTCGTTCTTGGCCAGCAAGAGGGGATGATC
genomic: TCAAGCACGTGCCGCTCATGCACCTGCTGTGGTCGCATTTCGCAGAGAAGgcgagtctag ... tgctgcgcagGTGTTGAACGAGGACCTACGGCTCGTTCTTGGCCAGCAAGAGGGGATGATC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaccgactcttgctcaaaatctagaccatgcatggtgctgtgtgtgctgcgcagGTGTTGAACGAGGACCTACGGCTCGTTCTTGGCCAGCAAGAGGGGATGATCGACGGCGCCAACGTCTGGAACTGGCCGGTGTCGTACGACAAACTCGGGA
aaaatcta TA-rich tract