1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttagtagcgcgatatatcatgatgttattcgatccgtgttataacgccgtggcatacatctttatcagtttagtggtcttgcttcctcttgcagAGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCTGCTTCCTCAGAGGAGATGCCAAAGATGGCGCCTGAGATGTAACCAGCGA
species | Zea mays |
transcript | GRMZM2G171354_T05 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAG AGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCTEST: gi|113702635|gb|EE680139.1|EE680139
genomic: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAGgttagtagcg ... cctcttgcagAGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCT
EST: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAG AGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCTEST: gi|71762206|gb|DR960143.1|DR960143
genomic: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAGgttagtagcg ... cctcttgcagAGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCT
EST: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAG AGAAAGAAGAAAGCAATGCTTTGTTATTAGGACAAGGAGGGAGATATTTTTEST: gi|211399534|gb|FL455814.1|FL455814
genomic: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAGgttagtagcg ... cctcttgcagAGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCT
EST: AAGAGGAACTGCTTGCGTACATCGACCGCAAARAGATTGCCAAGGCTCAG AGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTYTEST: gi|113702380|gb|EE679884.1|EE679884
genomic: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAGgttagtagcg ... cctcttgcagAGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCT
EST: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAG AGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCTEST: gi|28983565|gb|BQ538689.2|BQ538689
genomic: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAGgttagtagcg ... cctcttgcagAGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCT
EST: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAG AGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCTEST: gi|211130597|gb|FL448938.1|FL448938
genomic: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAGgttagtagcg ... cctcttgcagAGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCT
EST: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAG AGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCTEST: gi|45568449|gb|CK986069.1|CK986069
genomic: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAGgttagtagcg ... cctcttgcagAGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCT
EST: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAG AGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCTEST: gi|16920005|gb|BM074460.1|BM074460
genomic: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAGgttagtagcg ... cctcttgcagAGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCT
EST: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAG AGAAAGAAGAAAGCAATGCTAATGCTACTAGGACAAGGAGGGAGATACTTCEST: gi|211361627|gb|FL314636.1|FL314636
genomic: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAGgttagtagcg ... cctcttgcagAGAAAGAAGAAAGCAATGCTT-TGCTACTAGGACAAGGAGGGAGATACTTC
EST: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAG AGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCTEST: gi|32936966|gb|CF041785.1|CF041785
genomic: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAGgttagtagcg ... cctcttgcagAGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCT
EST: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAG AGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCTEST: gi|40337029|gb|CK371099.1|CK371099
genomic: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAGgttagtagcg ... cctcttgcagAGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCT
EST: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAG AGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCTEST: gi|5124115|gb|AI745739.1|AI745739
genomic: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAGgttagtagcg ... cctcttgcagAGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCT
EST: AAGAGGAACTGCTTGCGTACATCGGCCGCAAAGAGATTGCCAAGGCTCAG AGAAAGAAGAAAGCAATGCTTTGCTACTAGGGCAAGGAGGGAGATACTTCTEST: gi|211399535|gb|FL455815.1|FL455815
genomic: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAGgttagtagcg ... cctcttgcagAGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCT
EST: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAG AGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCTEST: gi|6563798|gb|AW231330.1|AW231330
genomic: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAGgttagtagcg ... cctcttgcagAGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCT
EST: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAG AGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCTEST: gi|37397469|gb|CF636033.1|CF636033
genomic: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAGgttagtagcg ... cctcttgcagAGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCT
EST: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAG AGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCTEST: gi|37379233|gb|CF626352.1|CF626352
genomic: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAGgttagtagcg ... cctcttgcagAGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCT
EST: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAG AGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCTEST: gi|44900735|gb|CK827280.1|CK827280
genomic: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAGgttagtagcg ... cctcttgcagAGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCT
EST: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAG AGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCTEST: gi|6539003|gb|AW225142.1|AW225142
genomic: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAGgttagtagcg ... cctcttgcagAGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCT
EST: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAG AGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCT
genomic: AAGAGGAACTGCTTGCGTACATCGACCGCAAAGAGATTGCCAAGGCTCAGgttagtagcg ... cctcttgcagAGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCT
tataacgccgtggcatacatctttatcagtttagtggtcttgcttcctcttgcagAGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCTGCTTCCTCAGAGGAGATGCCAAAGATGGCGCCTGAGATGTAACCAGCGA
ttataac putative branch site (score: 89)
tcttgcttcctcttgc putative PPT
atctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtagcgcgatatatcatgatgttattcgatccgtgttataacgccgtggcatacatctttatcagtttagtggtcttgcttcctcttgcagAGAAAGAAGAAAGCAATGCTTTGCTACTAGGACAAGGAGGGAGATACTTCTGCTTCCTCAGAGGAGATGCCAAAGATGGCGCCTGAGATGTAACCAGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG