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gtaagtttccactgaggcacaagcgacagaacttttttcttgataacattgcttaatgtctaaggtattcttatgtttttagGTTCTTGGGAACAAATACCAAAGTAAGCTGCTTGAAATAATTGACGCCAG
species | Zea mays |
transcript | GRMZM2G171354_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGAACACTGTGAAGTCCTTTCTTGATCCCAAAACTACCGCCAAGATACAT GTTCTTGGGAACAAATACCAAAGTAAGCTGCTTGAAATAATTGACGCCAGEST: gi|32933167|gb|CF037979.1|CF037979
genomic: GGAACACTGTGAAGTCCTTTCTTGATCCCAAAACTACCGCCAAGATACATgtaagtttcc ... atgtttttagGTTCTTGGGAACAAATACCAAAGTAAGCTGCTTGAAATAATTGACGCCAG
EST: GGAACACTGTGAAGTCCTTTCTTGATCCCAAAACTACCGCCAAGATACAT GTTCTTGGGAACAAATACCAAAGTAAGCTGCTTGAAATAATTGACEST: gi|211297306|gb|FK975033.1|FK975033
genomic: GGAACACTGTGAAGTCCTTTCTTGATCCCAAAACTACCGCCAAGATACATgtaagtttcc ... atgtttttagGTTCTTGGGAACAAATACCAAAGTAAGCTGCTTGAAATAATTGAC
EST: GGAACACTGTGAAGTCCTTTCTTGATCCCAAAACTACCGCCAAGATACAT GTTCTTGGGAACAAATACCAAAGTAAGCTGCTTGAAATAATTGACGCCAGEST: gi|71447517|gb|DR828567.1|DR828567
genomic: GGAACACTGTGAAGTCCTTTCTTGATCCCAAAACTACCGCCAAGATACATgtaagtttcc ... atgtttttagGTTCTTGGGAACAAATACCAAAGTAAGCTGCTTGAAATAATTGACGCCAG
EST: GTGAAGTCCTTTCTTGATCCCAAAACTACCGCCAAGATACAT GTTCTTGGGAACAAATACCAAAGTAAGCTGCTTGAAATAATTGACGCCAGEST: gi|6564181|gb|AW231803.1|AW231803
genomic: GTGAAGTCCTTTCTTGATCCCAAAACTACCGCCAAGATACATgtaagtttcc ... atgtttttagGTTCTTGGGAACAAATACCAAAGTAAGCTGCTTGAAATAATTGACGCCAG
EST: GGAACACTGTGAAGTCCTTTCTTGATCCCAAAACTACCGCCAAGATACAT GTTCTTGGGAACAAATACCAAAGTAAGCTGCTTGAAATAATTGACGCCAGEST: gi|211297305|gb|FK975032.1|FK975032
genomic: GGAACACTGTGAAGTCCTTTCTTGATCCCAAAACTACCGCCAAGATACATgtaagtttcc ... atgtttttagGTTCTTGGGAACAAATACCAAAGTAAGCTGCTTGAAATAATTGACGCCAG
EST: GGAACACTGTGAAGTCCTTTCTTGATCCCAAAACTACCGCCAAGATACAT GTTCTTGGGAACAAATACCAAAGTAAGCTGCTTGAAATAATTGACGCCAG
genomic: GGAACACTGTGAAGTCCTTTCTTGATCCCAAAACTACCGCCAAGATACATgtaagtttcc ... atgtttttagGTTCTTGGGAACAAATACCAAAGTAAGCTGCTTGAAATAATTGACGCCAG
agaacttttttcttgataacattgcttaatgtctaaggtattcttatgtttttagGTTCTTGGGAACAAATACCAAAGTAAGCTGCTTGAAATAATTGACGCCAG
ttcttat CT-rich tract
tattcttatgttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttccactgaggcacaagcgacagaacttttttcttgataacattgcttaatgtctaaggtattcttatgtttttagGTTCTTGGGAACAAATACCAAAGTAAGCTGCTTGAAATAATTGACGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT