1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtatatatacactattgttggagaacttggatgctcgtacattatttctggtttgcaattattattacacgatctcatttcagTGCCACCGGAGGAGCTCTATGCCACACAGCTTACTCAACTCCAAGAAATGGGGTTTATTGACACCGCGGAGAACATTCAAGCACTGGTCGCTACTGCTGG
species | Zea mays |
transcript | GRMZM2G170843_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAGCGGGCTTGGTTCGGGAGGTGGTCTAGGTGTTCCAAATACCTCCAGCG TGCCACCGGAGGAGCTCTATGCCACACAGCTTACTCAACTCCAAGAAATGGEST: gi|60347883|gb|DN214856.1|DN214856
genomic: CAGCGGGCTTGGTTCGGGAGGTGGTCTAGGTGTTCCAAATACCTCCAGCGgtgagtatat ... ctcatttcagTGCCACCGGAGGAGCTCTATGCCACACAGCTTACTCAACTCCAAGAAATGG
EST: CAGCGGGCTTGGTTCGGGAGGTGGTCTAGGTGTTCCAAATACCTCCAGCG TGCCACCGGAGGAGCTATATGCCACACAGCTTACTCAACTCCAAGAAATGGEST: gi|60341162|gb|DN208135.1|DN208135
genomic: CAGCGGGCTTGGTTCGGGAGGTGGTCTAGGTGTTCCAAATACCTCCAGCGgtgagtatat ... ctcatttcagTGCCACCGGAGGAGCTCTATGCCACACAGCTTACTCAACTCCAAGAAATGG
EST: CAGCGGGCTTGGTTCGGGAGGTGGTCTAGGTGTTCCAAATACCTCCAGCG TGCCACCGGAGGAGCTCTATGCCACACAGCTTACTCAACTCCAAGAAATGGEST: gi|19436368|gb|BM952778.1|BM952778
genomic: CAGCGGGCTTGGTTCGGGAGGTGGTCTAGGTGTTCCAAATACCTCCAGCGgtgagtatat ... ctcatttcagTGCCACCGGAGGAGCTCTATGCCACACAGCTTACTCAACTCCAAGAAATGG
EST: CAGCGGGCTTGGTTCGGGAGGTGGTCTAGGTGTTCCAAATACCTCCAGCG TGCCACCGGAGGAGCTCTATGCCACACAGCTTACTCAACTCCAAGAAATGGEST: gi|22490843|gb|BU050766.1|BU050766
genomic: CAGCGGGCTTGGTTCGGGAGGTGGTCTAGGTGTTCCAAATACCTCCAGCGgtgagtatat ... ctcatttcagTGCCACCGGAGGAGCTCTATGCCACACAGCTTACTCAACTCCAAGAAATGG
EST: CAGCGGGCTTGGTTCGGGAGGTGGTCTAGGTGTTCCAAATACCTCCAGCG TGCCACCGGAGGAGCTCTATGCCACACAGCTTACTCAACTCCAAGAAATGGEST: gi|211529714|gb|FL481421.1|FL481421
genomic: CAGCGGGCTTGGTTCGGGAGGTGGTCTAGGTGTTCCAAATACCTCCAGCGgtgagtatat ... ctcatttcagTGCCACCGGAGGAGCTCTATGCCACACAGCTTACTCAACTCCAAGAAATGG
EST: CAGCGGGCTTGGTTCGGGAGGTGGTCTAGGTGTTCCAAATACCTCCAGCG TGCCACCGGAGGAGCTCTATGCCACACAGCTTACTCAACTCCAAGAAATGG
genomic: CAGCGGGCTTGGTTCGGGAGGTGGTCTAGGTGTTCCAAATACCTCCAGCGgtgagtatat ... ctcatttcagTGCCACCGGAGGAGCTCTATGCCACACAGCTTACTCAACTCCAAGAAATGG
ggatgctcgtacattatttctggtttgcaattattattacacgatctcatttcagTGCCACCGGAGGAGCTCTATGCCACACAGCTTACTCAACTCCAAGAAATGGGGTTTATTGACACCGCGGAGAACATTCAAGCACTGGTCGCTACTGCTGG
tctcatttc CT-rich tract
tttgcaattattatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatatatacactattgttggagaacttggatgctcgtacattatttctggtttgcaattattattacacgatctcatttcagTGCCACCGGAGGAGCTCTATGCCACACAGCTTACTCAACTCCAAGAAATGGGGTTTATTGACACCGCGGAGAACATTCAAGCACTGGTCGCTACTGCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA