1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cactacaatccacatggagtggcactacaaggaacaggcccttagtgattttggttgtctggcttttgtttcatgcttctttctgtgctgtatttttcagGCCATGAACAACCAACATTTGTGCAACCGGCCAATCACTGTCTCTTATGCTTACAAGAAAGACACAAAAGGAGAGCGCCATGGCACACCAGCAG
species | Zea mays |
transcript | GRMZM2G170699_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGGCTTTGTGAGCTATGAATCCTTCGAGTCATCTGATCAAGCAATAGAG GCCATGAACAAACCA-CATTTGTGCAACCGGCCAATCACTGTCTCTTATGCEST: gi|88746230|gb|DY530371.1|DY530371
genomic: TTGGCTTTGTGAGCTATGAATCCTTCGAGTCATCTGATCAAGCAATAGAGgtaatgtaat ... tatttttcagGCCATGAACAA-CCAACATTTGTGCAACCGGCCAATCACTGTCTCTTATGC
EST: TTGGCTTTGTGAGCTATGAATCCTTCGAGTCATCTGATCAAGCAATAGAG GCCATGAACAACCAACATTTGTGCAACCGGCCAATCACTGTCTCTTAEST: gi|78124096|gb|DV542480.1|DV542480
genomic: TTGGCTTTGTGAGCTATGAATCCTTCGAGTCATCTGATCAAGCAATAGAGgtaatgtaat ... tatttttcagGCCATGAACAACCAACATTTGTGCAACCGGCCAATCACTGTCTCTTA
EST: TTGGCTTTGTGAGCTATGAATCCTTCGAGTCATCTGATCAAGCAATAGAG GCCATGAACAACCAATATTTGTGCAACCGGCCAATCACTGTCTCTTATGCT
genomic: TTGGCTTTGTGAGCTATGAATCCTTCGAGTCATCTGATCAAGCAATAGAGgtaatgtaat ... tatttttcagGCCATGAACAACCAACATTTGTGCAACCGGCCAATCACTGTCTCTTATGCT
tgattttggttgtctggcttttgtttcatgcttctttctgtgctgtatttttcagGCCATGAACAACCAACATTTGTGCAACCGGCCAATCACTGTCTCTTATGCTTACAAGAAAGACACAAAAGGAGAGCGCCATGGCACACCAGCAG
tatttttc CT-rich tract
tgtattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cactacaatccacatggagtggcactacaaggaacaggcccttagtgattttggttgtctggcttttgtttcatgcttctttctgtgctgtatttttcagGCCATGAACAACCAACATTTGTGCAACCGGCCAATCACTGTCTCTTATGCTTACAAGAAAGACACAAAAGGAGAGCGCCATGGCACACCAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
cactaca
- - - - - cacatgg
- - - - - - - - - - -gcactac
- - - - - - - - - - - - - - - - - caggccc
- - - - - - - - - - - - - - - - - - - - - - - - ttttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtctgg