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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgtggcctttgaaagtgtgagacgaatacacactgcatgcatacttgaatgcgtcttttatctttttagtgagattaacttctctgcatatgcctctagGTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTTAAAGGACAGAATAGTTTCATGTGAAATGCATGGCCGTGGCATTGAATTG

Basic information

species Zea mays
transcript GRMZM2G170291_T03
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G170291_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os12g18200.1 (Oryza sativa), 3'ss of exon 7
-atgtggcctttgaaagtgtgagacgaatacacactgcatgcatacttgaat-gcgtcttttatctttttagtgagattaacttctctgcatatgcctctagGTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTTAAAGGACAGAATAGTTTCATGTGAAATGCATGGCCGTGGCATTGAATTG
  |     ||||   ||| | | |    ||   | ||     |   |||| |     |   |    |   |   ||| |||||  | |  | ||||||  ||||||||||| ||||||||| | || ||||| ||||||||||| ||| |  | ||||||  ||||||||||||||| || ||||| ||||| || ||  | 
cgttaaatcttttctagt-taatatct-tagctaatgggctaacttttgattcattacaactggaatcccatgaagactaactgatttaaaaatgcctacagGTACCGAGGGAAGAGAATGCGAATTGACTATTTCCTTGTTTCAGAAAAACTGAAGGACCAAATAGTTTCATGTGACATTCATGGTCGTGGAATAGAGCTA

upper sequence: GRMZM2G170291_T02 (Zea mays), 3'ss of exon 7
lower sequence: AT3G48425.1 (Arabidopsis thaliana), 3'ss of exon 7
atgtggcctttgaaagtgtgagacgaatacacactgcatgcatacttgaatgcgtcttttatctttttagtgagat-taacttctctgcatatgcctc--tagGTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTTAAAGGACAGAATAGTTTCATGTGAAATGCATGGCCGTGGCATTGAATTG
  |||    | || | |         |     |  || || |  |  |||  |  |   | | | |  ||  | || |   || | ||  |  |   |  ||||||||| |||||||| |||||||||||||| || || || || |||||  | || ||| | |||||||| ||| | ||||| || ||||| || ||| | 
--gtgag--tggatactacacattttagttttatggcttggagtccagaac-ctccgcatgtttctaaagctatatattgattttttgttttggttgccatagGTACCGGGGAAAGAGGATGAGGATCGACTATTTTCTGGTCTCTGAACAACTCAAAGACCGTATAGTTTCTTGTAAGATGCACGGTCGTGGGATAGAACTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18167261|gb|BM337100.1|BM337100
EST:     GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCGATTGGCAA                         GTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
genomic: GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAAgtaagaaaca ... atgcctctagGTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
EST: gi|91872354|gb|EB402311.1|EB402311
EST:     GAAAAGGACATAGACGGTGGCTTTTCTTGGTCCGGTCATCCAATTGGCAA                         GTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTTGGAACAGTT
genomic: GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAAgtaagaaaca ... atgcctctagGTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
EST: gi|5030707|gb|AI714901.1|AI714901
EST:     GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAA                         GTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
genomic: GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAAgtaagaaaca ... atgcctctagGTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
EST: gi|91873536|gb|EB403493.1|EB403493
EST:     GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAA                         GTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
genomic: GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAAgtaagaaaca ... atgcctctagGTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
EST: gi|93284180|gb|EB676444.1|EB676444
EST:     GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAA                         GTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
genomic: GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAAgtaagaaaca ... atgcctctagGTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
EST: gi|74236587|gb|DT644501.1|DT644501
EST:     GAAAAGGACATAGACGGTGGCTTTTCTTGGTCCGGTCATCCAATTGGCAA                         GTACCGAGGAAAGAGAATGAGGATGGATTACTTCCTTGTTTCGGAACAGTT
genomic: GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAAgtaagaaaca ... atgcctctagGTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
EST: gi|76016190|gb|DT943360.1|DT943360
EST:     GAAAAGGACATAGACGGTGGCTTTTCTTGGTCCGGTCATCCAATTGGCAA                         GTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
genomic: GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAAgtaagaaaca ... atgcctctagGTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
EST: gi|50332549|gb|CO527675.1|CO527675
EST:     GAAAAGGACATAGACGGTGGCTTTTCTTGGTCCGGTCATCCAATTGGCAA                         GTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
genomic: GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAAgtaagaaaca ... atgcctctagGTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
EST: gi|6465582|gb|AW191177.1|AW191177
EST:     GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAA                         GTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
genomic: GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAAgtaagaaaca ... atgcctctagGTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
EST: gi|76021195|gb|DT948365.1|DT948365
EST:     GAAAAGGACATAGACGGTGGCTTCTTTTGGTCCGGTCATCCAATTGGCAA                         GTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
genomic: GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAAgtaagaaaca ... atgcctctagGTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
EST: gi|78024045|gb|DV492432.1|DV492432
EST:     GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAA                         GTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
genomic: GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAAgtaagaaaca ... atgcctctagGTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
EST: gi|86472832|gb|DY239202.1|DY239202
EST:     GAAAAGGACATAGACGGTGGCTTTTCTTGGTCCGGTCATCCAATTGGCAA                         GTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
genomic: GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAAgtaagaaaca ... atgcctctagGTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
EST: gi|211128671|gb|FL439959.1|FL439959
EST:     TCTTGGTCCGGTCATCCAATTGGCAA                         GTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
genomic: TCTTGGTCCGGTCATCCAATTGGCAAgtaagaaaca ... atgcctctagGTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
EST: gi|211321948|gb|FK966254.1|FK966254
EST:     GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAA                         GTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
genomic: GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAAgtaagaaaca ... atgcctctagGTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
EST: gi|89757610|gb|DY687139.1|DY687139
EST:     GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAA                         GTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
genomic: GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAAgtaagaaaca ... atgcctctagGTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
EST: gi|76014034|gb|DT941204.1|DT941204
EST:     GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAA                         GTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
genomic: GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAAgtaagaaaca ... atgcctctagGTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
EST: gi|149043280|gb|EE047341.2|EE047341
EST:     GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAA                         GTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
genomic: GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAAgtaagaaaca ... atgcctctagGTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
EST: gi|76018499|gb|DT945669.1|DT945669
EST:     GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAA                         GTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
genomic: GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAAgtaagaaaca ... atgcctctagGTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
EST: gi|78105399|gb|DV523817.1|DV523817
EST:     GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAA                         GTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
genomic: GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAAgtaagaaaca ... atgcctctagGTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
EST: gi|60351954|gb|DN218927.1|DN218927
EST:     GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAA                         GTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
genomic: GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAAgtaagaaaca ... atgcctctagGTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
EST: gi|60356095|gb|DN223068.1|DN223068
EST:     GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAA                         GTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
genomic: GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAAgtaagaaaca ... atgcctctagGTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
EST: gi|18661354|gb|BM501369.1|BM501369
EST:     GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAA                         GTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
genomic: GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAAgtaagaaaca ... atgcctctagGTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
EST: gi|71771441|gb|DR969378.1|DR969378
EST:     GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAA                         GTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT
genomic: GAAAAGGACATAGACGGTGGCTTCTCTTGGTCCGGTCATCCAATTGGCAAgtaagaaaca ... atgcctctagGTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaatgcgtcttttatctttttagtgagattaacttctctgcatatgcctctagGTACCGAGGAAAGAGAATGAGGATCGACTACTTCCTTGTTTCGGAACAGTTAAAGGACAGAATAGTTTCATGTGAAATGCATGGCCGTGGCATTGAATTG
                            gattaac  putative branch site (score: 2)
                                              tgcctct  putative PPT
         tcttttatcttttta  TA-rich tract