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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgacatcttggctacaattaggacacttatcacattgttaatgtcatctaacaggaagtattacttgcatcgagcattcacgttcttttcaatgttctagGTTGTAGGAGAATCTGCGCTGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCG

Basic information

species Zea mays
transcript GRMZM2G169516_T03
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15214479|gb|BI431015.1|BI431015
EST:     GAAGGTGAACGAGGACAGGTTATAGCTCAAAAGGATGTAATT                         GTTGTAGGAGAATCTGCGCTGTTCACTCCTGGTGATATTTCGTTCGTTCAA
genomic: GAAGGTGAACGAGGACAGGTTATAGCTCAAAAGGATGTAATTgtaagtattt ... aatgttctagGTTGTAGGAGAATCTGCGCTGTTCACTCCTGATGATATCTCGTTCGTTCAA
EST: gi|211073093|gb|FL464915.1|FL464915
EST:     AGCTTCTGGAAGGTGAACGAGGACAGGTTATAGCTCAAAAGGATGTAATT                         GTTGTAGGAGAATCTGCGCTGTTCACTCCTGATGATATCTCGTTCGTTCAA
genomic: AGCTTCTGGAAGGTGAACGAGGACAGGTTATAGCTCAAAAGGATGTAATTgtaagtattt ... aatgttctagGTTGTAGGAGAATCTGCGCTGTTCACTCCTGATGATATCTCGTTCGTTCAA
EST: gi|84969902|gb|DV170843.2|DV170843
EST:     AGCTTTTGGAAGGTGAACGAGGACAGGTTATAGCTCAAAAGGATGTAATT                         GTTGTAGGAGAATCTGCGCTGTTCACTCCTGATGATATCTCGTTCGTTCAA
genomic: AGCTTCTGGAAGGTGAACGAGGACAGGTTATAGCTCAAAAGGATGTAATTgtaagtattt ... aatgttctagGTTGTAGGAGAATCTGCGCTGTTCACTCCTGATGATATCTCGTTCGTTCAA
EST: gi|78121834|gb|DV540218.1|DV540218
EST:     AGCTTCTGGAAGGTGAACGAGGACAGGTTATAGCTCAAAAGGATGTAATT                         GTTGTAGGAGAATCTGCGCTGTTCACTCCTGATGATATTTCGTTCGTTCAA
genomic: AGCTTCTGGAAGGTGAACGAGGACAGGTTATAGCTCAAAAGGATGTAATTgtaagtattt ... aatgttctagGTTGTAGGAGAATCTGCGCTGTTCACTCCTGATGATATCTCGTTCGTTCAA
EST: gi|91870855|gb|EB401116.1|EB401116
EST:     AGCTTCTGGAAGGTGAACGAGGACAGGTTATAGCTCAAAAGGATGTAATT                         GTTGTAGGAGAATCTGCGCTGTTCACTCCTGATGATATCTCGTTCGTTCAA
genomic: AGCTTCTGGAAGGTGAACGAGGACAGGTTATAGCTCAAAAGGATGTAATTgtaagtattt ... aatgttctagGTTGTAGGAGAATCTGCGCTGTTCACTCCTGATGATATCTCGTTCGTTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctaacaggaagtattacttgcatcgagcattcacgttcttttcaatgttctagGTTGTAGGAGAATCTGCGCTGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCG
 atctaac  putative branch site (score: 2)
                                     ttcttttca  putative PPT
          aagtatta  TA-rich tract