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...tcacattgcccaacttttatctcaatatagtagattacgttcctttttctttgacacttgtgccgaagctaatgccttttgctggttcctctgattaaagGAAGGAACTTCTATGGCCAGAATTGGATAAATTGCTCCGCCAGGAAGATGATTCTTCAACTGCACCAACTCCTTACACAGCTGCTATCCCAGAATATAGA
species | Zea mays |
transcript | GRMZM2G168858_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGATGATCAATGCATTGAAGATGACTTTAACGCATG GCCATGAACTTCTATGGCCAGAATTGGATAAATTGCTCCGCCAGGAAGATGEST: gi|148931705|gb|EC874913.2|EC874913
genomic: TGATGATCAATGCATTGAGGATGACTTTAACGCATGgtacgaatcc ... ctgattaaagG-AAGGAACTTCTATGGCCAGAATTGGATAAATTGCTCCGCCAGGAAGATG
EST: GTTGGTCTTGGAGATGATGATCAATGCATTGAGGATGACTTTACCGCCTG GAAGGACCTTCTATGGCCAGAATTGGATAAATTGCTCCCGCCAGGA-GATGEST: gi|149075933|gb|EE164496.2|EE164496
genomic: GTTGGTCTTGGAGATGATGATCAATGCATTGAGGATGACTTTAACGCATGgtacgaatcc ... ctgattaaagGAAGGAACTTCTATGGCCAGAATTGGATAAATTGCTCC-GCCAGGAAGATG
EST: GTTGGTCTTGGAGATGATGATCAATGCATTGAGGATGACTTTAACGCATG GAAGGAACTTCTATGGCCAGAATTGGATAAATTGCTCCGCCAGGAAGATGA
genomic: GTTGGTCTTGGAGATGATGATCAATGCATTGAGGATGACTTTAACGCATGgtacgaatcc ... ctgattaaagGAAGGAACTTCTATGGCCAGAATTGGATAAATTGCTCCGCCAGGAAGATGA
tttctttgacacttgtgccgaagctaatgccttttgctggttcctctgattaaagGAAGGAACTTCTATGGCCAGAATTGGATAAATTGCTCCGCCAGGAAGATGATTCTTCAACTGCACCAACTCCTTACACAGCTGCTATCCCAGAATATAGA
ttcctct CT-rich tract
tgattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcacattgcccaacttttatctcaatatagtagattacgttcctttttctttgacacttgtgccgaagctaatgccttttgctggttcctctgattaaagGAAGGAACTTCTATGGCCAGAATTGGATAAATTGCTCCGCCAGGAAGATGATTCTTCAACTGCACCAACTCCTTACACAGCTGCTATCCCAGAATATAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgctg