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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atattcctggttaaggcttgaagataattattttaccagatttacttgtgttacttttcttactgcatgtgcttgtcaaagtgaacatttacatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA

Basic information

species Zea mays
transcript GRMZM2G168510_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168510_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os12g10784.3 (Oryza sativa), 3'ss of exon 7
atattcctggttaaggcttgaagataattattttaccagatttacttgtgttacttttctta-----ctgca-tgtgcttgtcaaagtgaacatttacatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA
   | |||| ||     || | |  |||   |||| || ||  | || ||||| |||||  |     ||  |   ||  ||||| | | ||| | ||  | ||||||||||||  |||||| |||||||| | || |||||||| |||| |||||| ||||||||||||||||| ||||||||||||||||
--ttacctgctt----tttcaggcaaatccctttatcacatccagttatgttaattttcggaggcatctctagcatgtctgtcataataaacttgtatctttccagGTTATGGCCAACTCTGCAGAGAAAATCAGACTTGCTGGAAATCAAAATGTTATGGTCTGTGAGCGTGGCACCATGTTTGGCTACA

upper sequence: GRMZM2G168510_T02 (Zea mays), 3'ss of exon 7
lower sequence: AT1G16340.3 (Arabidopsis thaliana), 3'ss of exon 7
atattcctggttaaggcttgaagataattattttaccag-atttacttgtgttacttttcttactgcatgtgcttgtcaaagtgaacatttacatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA
                     || ||  | ||| | | | |   |||| |||| | |    || || | |||  ||      || | ||   ||| |  |||| |||   |||||  | ||||| || || || || |||||||||||||||||||| |||||  | || ||||||||||| ||||
------------------gtgagttatctttttgatctgtacaaacttttgttccctggtatattgta-gtgactgatttcatgtatatc--cattttaagGTCATGAGAAACTCGGCTGAGAAGGTTAGACTCGCAGGGAATCCAAATGTGATGGTTTGTGAAAGAGGAACCATGTTTGGATACA

upper sequence: GRMZM2G168510_T02 (Zea mays), 3'ss of exon 7
lower sequence: EFJ32189 (Selaginella moellendorffii), 3'ss of exon 5
atattcctggttaaggcttgaagataattattttaccagatttacttgtgttacttttcttactgcatgtgcttgtcaaagtgaacatttacatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA
               |   ||||    |  | | |||   ||| ||  |||    |||||||| || | ||| | |           |||   |||| |||| |||   || ||  | |  ||  | ||||||||||| |||||||| || |||||||||||||| || ||||||||||||||||
---------------gtaagaagcctttcttatcaccttgttt-ctcatgtgttctttcttac-gcgtttgcgttt----------gttt--gtctctagGTGATGACCAATTCAGCCGCTAAGATCAGGCTTGCTGGAAATCCAAACGTCATGGTCTGTGAGCGCGGCACCATGTTTGGCTACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5847371|gb|AW000450.1|AW000450
EST:     AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCT                         GTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
genomic: AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
EST: gi|60351240|gb|DN218213.1|DN218213
EST:     AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCT                         GTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
genomic: AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
EST: gi|4887386|gb|AI677485.1|AI677485
EST:     AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCT                         GTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
genomic: AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
EST: gi|61118196|gb|DN559157.1|DN559157
EST:     AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCT                         GTCATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
genomic: AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
EST: gi|5296161|gb|AI783036.1|AI783036
EST:     AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCT                         GTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
genomic: AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
EST: gi|91055907|gb|EB166325.1|EB166325
EST:     AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCT                         GTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
genomic: AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
EST: gi|50323772|gb|CO518898.1|CO518898
EST:     AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCT                         GTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
genomic: AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
EST: gi|50323794|gb|CO518920.1|CO518920
EST:     AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCT                         GTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
genomic: AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
EST: gi|71307284|gb|DR789817.1|DR789817
EST:     AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCT                         GTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
genomic: AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
EST: gi|9794838|gb|BE553146.1|BE553146
EST:     AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCT                         GTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
genomic: AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
EST: gi|60396848|gb|DN229670.1|DN229670
EST:     AGACTGAAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCT                         GTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
genomic: AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
EST: gi|6227240|gb|AW155839.1|AW155839
EST:     AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCT                         GTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
genomic: AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
EST: gi|5871277|gb|AW017748.1|AW017748
EST:     AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCT                         GTTATGGTGAACTCTACAGAGAAAGTTTTGCTTGCTGGGAATCCAAATGTG
genomic: AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
EST: gi|4887387|gb|AI677486.1|AI677486
EST:     AGACTGGAAGAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCT                         GTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
genomic: AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
EST: gi|61118194|gb|DN559155.1|DN559155
EST:     AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTCTGCGCCTTCT                         GTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
genomic: AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
EST: gi|74236361|gb|DT644275.1|DT644275
EST:     AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCT                         GTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
genomic: AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
EST: gi|5770206|gb|AI973380.1|AI973380
EST:     AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCT                         GTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
genomic: AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
EST: gi|91050684|gb|EB161102.1|EB161102
EST:     AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCT                         GTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
genomic: AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
EST: gi|31362214|gb|CD446571.1|CD446571
EST:     AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCT                         GTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
genomic: AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
EST: gi|60357398|gb|DN224371.1|DN224371
EST:     AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCT                         GTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
genomic: AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
EST: gi|5847238|gb|AW000317.1|AW000317
EST:     AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCT                         GTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
genomic: AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
EST: gi|78022942|gb|DV491329.1|DV491329
EST:     AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCT                         GTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
genomic: AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
EST: gi|71763878|gb|DR961815.1|DR961815
EST:     AAAATTATCAATATCAAGAAAGAACAATTCTGTGCGCCTTCT                         GTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
genomic: AAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
EST: gi|31355531|gb|CD439888.1|CD439888
EST:     AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCT                         GTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
genomic: AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
EST: gi|211382425|gb|FK948866.1|FK948866
EST:     AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCT                         GTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
genomic: AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
EST: gi|60355225|gb|DN222198.1|DN222198
EST:     AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCT                         GTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
genomic: AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
EST: gi|6828178|gb|AW331821.1|AW331821
EST:     AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCT                         GTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
genomic: AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
EST: gi|71449637|gb|DR830687.1|DR830687
EST:     AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCT                         GTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
genomic: AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
EST: gi|26457480|gb|CA829063.1|CA829063
EST:     AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCT                         GTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
genomic: AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
EST: gi|91051935|gb|EB162353.1|EB162353
EST:     AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCT                         GTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
genomic: AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
EST: gi|61118195|gb|DN559156.1|DN559156
EST:     AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCT                         GTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
genomic: AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
EST: gi|31361455|gb|CD445812.1|CD445812
EST:     AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCT                         GTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
genomic: AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTG
EST: gi|211215731|gb|FL322482.1|FL322482
EST:     AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCT                         GTTATGGTGAACTCTACAGAGAAAGTAA
genomic: AGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 125

ACTGATCTTCTAGTGGCTGCTGCTAAGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 111

ACTGATCTTCTAGTGGCTGCTGCTAAGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 99

ACTGATCTTCTAGTGGCTGCTGCTAAGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA


Block sizes: 48 (upstream exon), 47 (downstream exon)
Score: 73

ACTGATCTTCTAGTGGCTGCTGCTAAGACTGGAAAAATTATCAATATCAAGAAAGGACAATTCTGTGCGCCTTCTgtaagttgca ... acatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgttacttttcttactgcatgtgcttgtcaaagtgaacatttacatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA
           ttcttac  putative branch site (score: 73)
                                              catctcc  putative PPT
     ttactttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atattcctggttaaggcttgaagataattattttaccagatttacttgtgttacttttcttactgcatgtgcttgtcaaagtgaacatttacatctccagGTTATGGTGAACTCTACAGAGAAAGTAAGGCTTGCTGGGAATCCAAATGTGATGGTCTGTGAGCGTGGTACCATGTTTGGCTACA

- -ttcctgg
- - - - - - - - - -gaagataa
- - - - - - - - - - - - - - - - - - - - -ttacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttgt