1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttctggttgagcagcaacacataataaggaaccaagaagcagatgcagcatttccccccctgtaatttgttgctgacaagtctgtcgtatttgaaatcagTCTGCATGCCCCAAATCAGAAGCTGCGGGAGACGATTGTTCCTAGCGCCAAGTCTTACCCCTTGGGAGCACTAATGGATGACTGCAAGAGTTACTTCCTT
species | Zea mays |
transcript | GRMZM2G168412_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACAATAAAAATGCTAGCATTTCACAAGCTTCAGTCAACGGGGGCAGTCAG TCTGCATGCCCCAAATCAGAAGCTGCGGGAGACGATTGTTCCTAGCGCCAAEST: gi|71766718|gb|DR964655.1|DR964655
genomic: ACAATAAAAATGCTAGCATCTCACAAGCTTCAGTCAACGCTGGCAGTCAGgtatgttatt ... ttgaaatcagTCTGCATGCCCCAAATCAGAAGCTGCGGGAGACGATTGTTCCTAGCGCCAA
EST: AAATGCTAGCATCTCACAAGCTTCAGTCAACGCTGGCAGTCAG TCTGCATGCCCCAAATCAGAAGCTGCGGGAGACGATTGTTCCTAGCGCCAAEST: gi|32803194|gb|CD955430.1|CD955430
genomic: AAATGCTAGCATCTCACAAGCTTCAGTCAACGCTGGCAGTCAGgtatgttatt ... ttgaaatcagTCTGCATGCCCCAAATCAGAAGCTGCGGGAGACGATTGTTCCTAGCGCCAA
EST: ACAATAAAAATGCTAGCATCTCACAAGCTTCAGTCAACGCTGGCAGTCAG TCTGCATGCCCCAAATCAGAAGCTGCGGGAGACGATTGTTCCTAGCGCCAAEST: gi|88747606|gb|DY531747.1|DY531747
genomic: ACAATAAAAATGCTAGCATCTCACAAGCTTCAGTCAACGCTGGCAGTCAGgtatgttatt ... ttgaaatcagTCTGCATGCCCCAAATCAGAAGCTGCGGGAGACGATTGTTCCTAGCGCCAA
EST: ACAATAAAAATGCTAGCATCTCACAAGCTTCAGTCAACGCTGGCAGTCAG TCTGCATGCCCCAAATCAGAAGCTGCGGGAGACGATTGTTCCTAGCGCCAAEST: gi|13150086|gb|BG320408.1|BG320408
genomic: ACAATAAAAATGCTAGCATCTCACAAGCTTCAGTCAACGCTGGCAGTCAGgtatgttatt ... ttgaaatcagTCTGCATGCCCCAAATCAGAAGCTGCGGGAGACGATTGTTCCTAGCGCCAA
EST: ACAATAAAAATGCTAGCATCTCACAAGCTTCAGTCAACGCTGGCAGTCAG TCTGCATGCCCCAAATCAGAAGCTGCGGGAGACGATTGTTCCTAGCGCCAAEST: gi|13149611|gb|BG319933.1|BG319933
genomic: ACAATAAAAATGCTAGCATCTCACAAGCTTCAGTCAACGCTGGCAGTCAGgtatgttatt ... ttgaaatcagTCTGCATGCCCCAAATCAGAAGCTGCGGGAGACGATTGTTCCTAGCGCCAA
EST: KCAATAAAAATGCTKGCATCTCACAAGCTTCAGTCAACGCTGGCAGTCAG TCTGCATSCCCCAAATCAGAAGCTGCGGGAGACGATTGTTCCTAGCGCCAAEST: gi|78122643|gb|DV541027.1|DV541027
genomic: ACAATAAAAATGCTAGCATCTCACAAGCTTCAGTCAACGCTGGCAGTCAGgtatgttatt ... ttgaaatcagTCTGCATGCCCCAAATCAGAAGCTGCGGGAGACGATTGTTCCTAGCGCCAA
EST: ACAATAAAAATGCTAGCATCTCACAAGCTTCAGTCAACGCTGGCAGTCAG TCTGCATGCCCCAAATCAGAAGCTGCGGGAGACGATTGTTCCTAGCGCCAAEST: gi|60345957|gb|DN212930.1|DN212930
genomic: ACAATAAAAATGCTAGCATCTCACAAGCTTCAGTCAACGCTGGCAGTCAGgtatgttatt ... ttgaaatcagTCTGCATGCCCCAAATCAGAAGCTGCGGGAGACGATTGTTCCTAGCGCCAA
EST: CTAGCATCTCACAAGTTTCAGTCAACGCTGGCAGTCAG TCTGCATGCCCCAAATCAGAAGCTGCGGGAGACGATTGTTCCTAGCGCCAAEST: gi|71328602|gb|DR800966.1|DR800966
genomic: CTAGCATCTCACAAGCTTCAGTCAACGCTGGCAGTCAGgtatgttatt ... ttgaaatcagTCTGCATGCCCCAAATCAGAAGCTGCGGGAGACGATTGTTCCTAGCGCCAA
EST: ACAATAAAAATGCTAGCATCTCACAAGCTTCAGTCAACGCTGGCAGTCAG TCTGCATGCCCCAAATCAGAAGCTGCGGGAGACGATTGTTCCTAGCGCCAAEST: gi|78118843|gb|DV537227.1|DV537227
genomic: ACAATAAAAATGCTAGCATCTCACAAGCTTCAGTCAACGCTGGCAGTCAGgtatgttatt ... ttgaaatcagTCTGCATGCCCCAAATCAGAAGCTGCGGGAGACGATTGTTCCTAGCGCCAA
EST: ACAATAAAAATGATAGCATCTCACAAGCTTCAGTCAACGCTGGCAGTCAG TCTGCATGCCCCAAATCAGAAGCTGCGGGAGACGATTGTTCCTAGCGCCAAEST: gi|76286139|gb|DV025707.1|DV025707
genomic: ACAATAAAAATGCTAGCATCTCACAAGCTTCAGTCAACGCTGGCAGTCAGgtatgttatt ... ttgaaatcagTCTGCATGCCCCAAATCAGAAGCTGCGGGAGACGATTGTTCCTAGCGCCAA
EST: ACAATAAAAATGCTAGCATCTCACAAGCTTCAGTCAACGCTGGCAGTCAG TCTGCATGCCCCAAATCAGAAGCTGCGGGAGACGATTGTTCCTAGCGCCAAEST: gi|76015835|gb|DT943005.1|DT943005
genomic: ACAATAAAAATGCTAGCATCTCACAAGCTTCAGTCAACGCTGGCAGTCAGgtatgttatt ... ttgaaatcagTCTGCATGCCCCAAATCAGAAGCTGCGGGAGACGATTGTTCCTAGCGCCAA
EST: ACAATAAAAATGCTAGCATCTCACAAGCTTCAGTCAACGCTGGCAGTCAG TCTGCATGCCCCAAATCAGAAGCTGCGGGAGACGATTGTTCCTAGCGCCAA
genomic: ACAATAAAAATGCTAGCATCTCACAAGCTTCAGTCAACGCTGGCAGTCAGgtatgttatt ... ttgaaatcagTCTGCATGCCCCAAATCAGAAGCTGCGGGAGACGATTGTTCCTAGCGCCAA
cagcatttccccccctgtaatttgttgctgacaagtctgtcgtatttgaaatcagTCTGCATGCCCCAAATCAGAAGCTGCGGGAGACGATTGTTCCTAGCGCCAAGTCTTACCCCTTGGGAGCACTAATGGATGACTGCAAGAGTTACTTCCTT
tgctgac putative branch site (score: 2)
tatttgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctggttgagcagcaacacataataaggaaccaagaagcagatgcagcatttccccccctgtaatttgttgctgacaagtctgtcgtatttgaaatcagTCTGCATGCCCCAAATCAGAAGCTGCGGGAGACGATTGTTCCTAGCGCCAAGTCTTACCCCTTGGGAGCACTAATGGATGACTGCAAGAGTTACTTCCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA