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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtttaccatgctagtactcagctggagtgtatttgaaacttttaaatactgtctgttttcatcaaaccatttgctaatagttttttacaatgttttcagGTATTGCCTATCGGGATCATCTGATTCAATGATAAG

Basic information

species Zea mays
transcript GRMZM2G167999_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G167999_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os12g06810.2 (Oryza sativa), 3'ss of exon 7
-tgtttaccatgctagtactcagctggagtgtat-ttgaaacttttaaatactgtctgttttcatcaaaccatttgctaatagttttttacaatgttttcagGTATTGCCTATCGGGATCATCTGATTCAATGATAAG
   | |    | ||  || |    |    |  || ||   | ||     || |   | | || | | |   ||||  |  | | | | || ||||||| ||||||||| || || || ||||||||||||||||||||
aaatgttttttccttttattttattattattaatattattatttggggttatttaatttgttgagctagtaatttaat--ttggtctgtaaaatgtttacagGTATTGTCTTTCAGGCTCATCTGATTCAATGATAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71433407|gb|DR814457.1|DR814457
EST:     AGAGGGCACACTGACAATATCAGAGCCTTGCTTGTTGATTCTACAGGGAG                         GTATTGCCTATCGGGATCATCTGATTCAATGATAAG
genomic: AGAGGGCACACTGACAATATCAGAGCCTTGCTTGTTGATTCTACAGGGAGgttggtgtct ... atgttttcagGTATTGCCTATCGGGATCATCTGATTCAATGATAAG
EST: gi|18385199|gb|BM418398.1|BM418398
EST:     AGAGGGCACNCTG-CAATATCAGAGCCTTGCTTGTTGATTCTACAGGGAG                         GTATTGCCTATCGGGATCATCTGATTCAATGATAAG-CTATGG
genomic: AGAGGGCACACTGACAATATCAGAGCCTTGCTTGTTGATTCTACAGGGAGgttggtgtct ... atgttttcagGTATTGCCTATCGGGATCATCTGATTCAATGATAAGACTATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatactgtctgttttcatcaaaccatttgctaatagttttttacaatgttttcagGTATTGCCTATCGGGATCATCTGATTCAATGATAAG
                           tgctaat  putative branch site (score: 2)
                                              tgttttc  putative PPT
                              taatagttttttacaa  TA-rich tract