1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tttaattctggttcttttacatctttgtatgatctccttactgaaacatactgattatattatgcaatatcggtttaatggttccttggcgctcctgcagTTATCAAATGGACATTTGAAACTACCTTCTTATTTTGGGGCAATTGCGGTGTTAGTCTGCTTCGTGTCTGCTGGTTTCTCTCTTGCATTTGCTTTCGCTA
species | Zea mays |
transcript | GRMZM2G166903_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTTGGTATTCCAACCCAAAGG TTATCAAATGGACATTTGAAACTACCTTCTTATTTTGGGGCAATTGGGGGGEST: gi|110200546|gb|EC882443.1|EC882443
genomic: TTTGGTATTTCAAGCCAAAGGgttagccctc ... gctcctgcagTTATCAAATGGACATTTGAAACTACCTTCTTATTTTGGGGCAATTGCGGTG
EST: TTCAAGCCAAAGG TTATCAAATGGACATTTGAAACTACCTTCTTATTTTGGGGCAATTGCGGTG
genomic: TTCAAGCCAAAGGgttagccctc ... gctcctgcagTTATCAAATGGACATTTGAAACTACCTTCTTATTTTGGGGCAATTGCGGTG
acatactgattatattatgcaatatcggtttaatggttccttggcgctcctgcagTTATCAAATGGACATTTGAAACTACCTTCTTATTTTGGGGCAATTGCGGTGTTAGTCTGCTTCGTGTCTGCTGGTTTCTCTCTTGCATTTGCTTTCGCTA
cgctcct CT-rich tract
attatattatgcaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaattctggttcttttacatctttgtatgatctccttactgaaacatactgattatattatgcaatatcggtttaatggttccttggcgctcctgcagTTATCAAATGGACATTTGAAACTACCTTCTTATTTTGGGGCAATTGCGGTGTTAGTCTGCTTCGTGTCTGCTGGTTTCTCTCTTGCATTTGCTTTCGCTA
- - - -ctggttc
- - - - - - - - - - - - ttgtatg
- - - - - - - - - - - - - - - - - - cttactg
- - - - - - - - - - - - - - - - - - - - - - - catactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttatgca