1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagtccttgactgcactttcctcctttttttggttttaagtcaccttatgtttactgaagatgatggaaccataaatattgcactcacttttttttcattcaactactgacctgccataaccaggtgttcactgaacattgctacgccttttcagGTGAAAGTTAAAGATCGAAGTGTGATTGTTACAACAGATGCAGAGACAAAAGTTAGCCAACCTTCTAGTTTGCAAGAATTGATAGATAAGGAGACCG
species | Zea mays |
transcript | GRMZM2G166597_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTCAGGATTGGTGTGGACTATATAGTGATTTGCCCAGTAGACAACTGAAA GTGAAAGTTAAAGATCGAAGTGTGATTGTTACAACAGATGCAGAGACAAAAEST: gi|86466752|gb|DY233122.1|DY233122
genomic: TTCAGGATTGGTGTGGACTGTATAGTGATTTGCCCAGTAGACAACTGAAAgtgagtcctt ... gccttttcagGTGAAAGTTAAAGATCGAAGTGTGATTGTTACAACAGATGCAGAGACAAAA
EST: TTCAGGATTGGTGTGGACTATATAGTGATTTGCCCAGTAGACAACTGAAA GTGAAAGTTAAAGATCGAAGTGTGATTGTCACAACAGATGCAGAGACAAAAEST: gi|149005494|gb|EE040052.2|EE040052
genomic: TTCAGGATTGGTGTGGACTGTATAGTGATTTGCCCAGTAGACAACTGAAAgtgagtcctt ... gccttttcagGTGAAAGTTAAAGATCGAAGTGTGATTGTTACAACAGATGCAGAGACAAAA
EST: TTCAGGATTGGTGTGGACTGTATAGTGATTTGCCCAGTAGGCAACTGAAA GTGAAAGTTAAAGATCGAAGTGTGATTGTTACAACAGATGCAGAGACAAAAEST: gi|78089555|gb|DV517929.1|DV517929
genomic: TTCAGGATTGGTGTGGACTGTATAGTGATTTGCCCAGTAGACAACTGAAAgtgagtcctt ... gccttttcagGTGAAAGTTAAAGATCGAAGTGTGATTGTTACAACAGATGCAGAGACAAAA
EST: TTCAGGATTGGTGTGGACTGTATAGTGATTTGCCCAGTAGACAACTGAAA GTGAAAGTTAAAGATCGAAGTGTGATTGTTACAACAGATGCAGAGACAAAAEST: gi|94473759|gb|EB702717.1|EB702717
genomic: TTCAGGATTGGTGTGGACTGTATAGTGATTTGCCCAGTAGACAACTGAAAgtgagtcctt ... gccttttcagGTGAAAGTTAAAGATCGAAGTGTGATTGTTACAACAGATGCAGAGACAAAA
EST: TTCAGGATTGGTGTGGACTGTATAGTGATTTGCCCAGTAGACAACTGAAA GTGAAAGTTAAAGATCGAAGTGTGATTGTTACAACAGATGCAGAGACAAAAEST: gi|78111493|gb|DV529890.1|DV529890
genomic: TTCAGGATTGGTGTGGACTGTATAGTGATTTGCCCAGTAGACAACTGAAAgtgagtcctt ... gccttttcagGTGAAAGTTAAAGATCGAAGTGTGATTGTTACAACAGATGCAGAGACAAAA
EST: TTCAGGATTGGTGTGGACTGTATAGTGATTTGCCCAGTAGACAACTGAAA GTGAAAGTTAAAGATCGAAGTGTGATTGTTACAACAGATGCAGAGACAAAAEST: gi|76917159|gb|DV166704.1|DV166704
genomic: TTCAGGATTGGTGTGGACTGTATAGTGATTTGCCCAGTAGACAACTGAAAgtgagtcctt ... gccttttcagGTGAAAGTTAAAGATCGAAGTGTGATTGTTACAACAGATGCAGAGACAAAA
EST: TTCAGGATTGGTGTGGACTGTATAGTGATTTGCCCAGTAGACAACTGAAA GTGAAAGTTAAAGATCGAAGTGTGATTGTTACAACAGATGCAGAGACAAAA
genomic: TTCAGGATTGGTGTGGACTGTATAGTGATTTGCCCAGTAGACAACTGAAAgtgagtcctt ... gccttttcagGTGAAAGTTAAAGATCGAAGTGTGATTGTTACAACAGATGCAGAGACAAAA
caactactgacctgccataaccaggtgttcactgaacattgctacgccttttcagGTGAAAGTTAAAGATCGAAGTGTGATTGTTACAACAGATGCAGAGACAAAAGTTAGCCAACCTTCTAGTTTGCAAGAATTGATAGATAAGGAGACCG
cgccttttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtccttgactgcactttcctcctttttttggttttaagtcaccttatgtttactgaagatgatggaaccataaatattgcactcacttttttttcattcaactactgacctgccataaccaggtgttcactgaacattgctacgccttttcagGTGAAAGTTAAAGATCGAAGTGTGATTGTTACAACAGATGCAGAGACAAAAGTTAGCCAACCTTCTAGTTTGCAAGAATTGATAGATAAGGAGACCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA