Sequence
atgc intronic sequence ATGC exonic sequence...ttgccttttttccgccgccaaacccgcccttctccgctcgttccgtttcgtttccactagccatccaataatgttgccccaccatcgatgtaccgagcagCATATTCGGGCCGGTGCAGGACATGCGCATCCCATACCAGCAGAAGCGCATGTTCGGCTTCGTCACCTTCATGTATGCCGAGACGGTGAAGGCCATCCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G166062_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os11g03220.1 (Oryza sativa), 3'ss of exon 2
-ttgccttttttccgccgccaaacccgcccttctccg-ctcgttccg-tttcgtttccactagccatccaataa----------tgttgccccaccatcgatgtaccgag-----cagCATATTCGGGCCGGTGCAGGACATGCGCATCCCATACCAGCAGAAGCGCATGTTCGGCTTCGTCACCTTCATGTATGCCGAGACGGTGAAGGCCATCCTG
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gtatcacatgttccaccatagtgcccctattgatgtgtcttgtttcaatattggagcatttcataatttaatgaatgcaatctgttttggcttgtttgtgttgtgtggggacaaccagCATGTATGGGATGGTGCAAGATGTGCGTATCCCATACCAGGAGAAGCGCATGTTTGGTTTTGTCACCTTCGCCTACCAAAAGACAGTGAAGCTAATTCTT
upper sequence: GRMZM2G166062_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os12g02970.1 (Oryza sativa), 3'ss of exon 2
-ttgccttttttccgccgccaaacccgcccttctccg-ctcgttccg-tttcgtttccactagccatccaataa----------tgttgccccaccatcgatgtaccgag-----cagCATATTCGGGCCGGTGCAGGACATGCGCATCCCATACCAGCAGAAGCGCATGTTCGGCTTCGTCACCTTCATGTATGCCGAGACGGTGAAGGCCATCCTG
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gtatcacatgttccaccatagtgcccctattgatgtgtcttgtttcaatattggagcatttcataatttaatgaatgcaatctgttttggcttgtttgtgtcatgtggggacaaccagCATGTATGGGATGGTGCAAGATGTGCGTATCCCATACCAGGAGAAGTGCATGTTTGGTTTCGTCACCTTCGCCTACCAAAAGACAGTGAAGCTAATTCTT
upper sequence: GRMZM2G166062_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA09G35980.1 (Glycine max), 3'ss of exon 3
-------ttgccttttttccgccgccaaacccgccctt-ctccgctcgttccgtttcgttt-ccactagccatccaataatgttgccccaccatcgatgtaccgagcagCATATTCGGGCCGGTGCAGGACATGCGCATCCCATACCAGCAGAAGCGCATGTTCGGCTTCGTCACCTTCATGTATGCCGAGACGGTGAAGGCCATCCTG
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gttattattgcttaggtttagctgtaactttagcttcgactgggatcattgtgcatagttggtcagcggcagaaatattaacttgagtttttaattctgt-tgttgaagCATTTATGGCCCAGTGCAAGACGTGAGGATCCCATACCAGCAGAAGCGAATGTTTGGCTTTGTTACCTTTGTTTATCCAGAGACTGTGAAGCTTATTCTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcgtttccactagccatccaataatgttgccccaccatcgatgtaccgagcagCATATTCGGGCCGGTGCAGGACATGCGCATCCCATACCAGCAGAAGCGCATGTTCGGCTTCGTCACCTTCATGTATGCCGAGACGGTGAAGGCCATCCTG
aataatgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgccttttttccgccgccaaacccgcccttctccgctcgttccgtttcgtttccactagccatccaataatgttgccccaccatcgatgtaccgagcagCATATTCGGGCCGGTGCAGGACATGCGCATCCCATACCAGCAGAAGCGCATGTTCGGCTTCGTCACCTTCATGTATGCCGAGACGGTGAAGGCCATCCTG
-tgccttt
- - - - - - -gccgcca
- - - - - - - - - - - - - - cttctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caccatc